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Detailed information on CNT30554896

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 4e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696223	Oryza glaberrima	Oryza sativa	69.95	74.72	99.7	668	forward
CNT30186748	Oryza glaberrima	Secale cereale	41.47	46.98	93.18	396	forward
CNT30297962	Oryza glaberrima	Triticum aestivum	48.17	66.09	90.87	460	forward
CNT30252168	Oryza glaberrima	Avena sativa	48.27	55.81	89.8	461	forward
CNT30664228	Oryza glaberrima	Triticum dicoccoides	49.01	56.52	91.03	468	forward
CNT30685463	Oryza glaberrima	Triticum urartu	49.01	52.58	90.81	468	forward
CNT30596822	Oryza glaberrima	Oryza meridionalis	45.13	50.71	98.84	431	forward
CNT30371058	Oryza glaberrima	Oryza glumipatula	54.76	100.38	98.47	523	forward
CNT30108137	Oryza glaberrima	Oryza longistaminata	82.51	99.87	98.73	788	forward
CNT30103478	Oryza glaberrima	Oryza rufipogon	89.84	88.27	99.42	858	forward
CNT30117552	Oryza glaberrima	Oryza nivara	87.64	87.83	99.16	837	forward
CNT30604606	Oryza glaberrima	Oryza punctata	49.53	56.99	91.33	473	forward

Expression of CNT30554896

Peptides detected in this lncRNA

>peptide 1 (44 aa)
YCIRKFKVLINPSMPQYKQFNYIFTLYIARNGYILGSREYLFLI*

Sequence

>CNT30554896
CTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAACTACATATTTACACTATACATAGCCAGAAATGGTTAT
ATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGA
AACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCT
TCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGGACGAA
GTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCG
CTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCA
TCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAA
CTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTG
GGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGA
GCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGGAGTTGGAGATGGCGC