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Detailed information on CNT30108137


BLAST search results

BLAST vs Swiss-Prot:
sp|P04159|CB21_PEA, E-value = 2e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Oryza longistaminataOryza sativa76.4367.4599.5603forward
CNT30186748Oryza longistaminataSecale cereale50.1946.9892.68396forward
CNT30297962Oryza longistaminataTriticum aestivum51.8458.7692.18409forward
CNT30554896Oryza longistaminataOryza glaberrima99.8782.5198.73788forward
CNT30252168Oryza longistaminataAvena sativa51.0848.7990.82403forward
CNT30664228Oryza longistaminataTriticum dicoccoides51.8449.492.42409forward
CNT30685463Oryza longistaminataTriticum urartu51.8445.9692.18409forward
CNT30596822Oryza longistaminataOryza meridionalis52.0948.3599.51411forward
CNT30371058Oryza longistaminataOryza glumipatula66.29100.3898.66523forward
CNT30103478Oryza longistaminataOryza rufipogon99.8781.0799.11788forward
CNT30117552Oryza longistaminataOryza nivara97.8581.0198.83772forward
CNT30604587Oryza longistaminataOryza punctata48.0462.4493.93379forward

Expression of CNT30108137

Peptides detected in this lncRNA

>peptide 1 (59 aa)
IRKFKVLINPFMPQYKQFRLHIYTIHSQKWLYFGIEGVIVSDLIEMRNPLIRITPQIST*

>peptide 2 (33 aa)
MVIFWDRGSNCFRSNRDEKSANQNNTTDKYLDH*

Sequence

>CNT30108137
GTATACGTAAATTTAAAGTACTAATTAATCCTTTCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTT
TGGGATCGAGGGAGTAATTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCATTAGTTGGGAAACG
AATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCC
CAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTG
GTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGTGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGA
AGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGC
CCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCG
CCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCCGG