« Back to Secale cereale search


Detailed information on CNT30186748


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Secale cerealeOryza sativa46.9844.393.18396forward
CNT30298565Secale cerealeTriticum aestivum75.5673.6494.35637forward
CNT30554896Secale cerealeOryza glaberrima46.9841.4793.18396forward
CNT30252168Secale cerealeAvena sativa64.0665.3893.7540forward
CNT30664228Secale cerealeTriticum dicoccoides73.4374.7696.28619forward
CNT30685463Secale cerealeTriticum urartu75.0971.1296.52633forward
CNT30362790Secale cerealeSorghum bicolor55.1651.7291.4465forward
CNT30596822Secale cerealeOryza meridionalis47.0946.7193.2397forward
CNT30369182Secale cerealeOryza glumipatula48.1648.3391.38406forward
CNT30108137Secale cerealeOryza longistaminata46.9850.1992.68396forward
CNT30103478Secale cerealeOryza rufipogon46.9840.7493.18396forward
CNT30117552Secale cerealeOryza nivara46.9841.5592.93396forward

Expression of CNT30186748

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (60 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGRWCCG

Sequence

>CNT30186748
ATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGACTCGCCCTCACATGCAAC
ATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCCGCGCGTGCACGCACGCGC
TAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGCGT
GCACGAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCG
GGCGAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCG
GCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGT
CGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGC
CTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGTGAGCTG
AGGCTGACTGTAGGAGGCGCTGGTGGTCGTTGGTGCTGTGGAG