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Detailed information on CNT30664228


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Triticum dicoccoidesOryza sativa56.5252.3591.03468forward
CNT30186748Triticum dicoccoidesSecale cereale74.7673.4396.28619forward
CNT30298565Triticum dicoccoidesTriticum aestivum101.6997.3498.1842forward
CNT30393211Triticum dicoccoidesTriticum turgidum69.3299.1499.65574forward
CNT30554896Triticum dicoccoidesOryza glaberrima56.5249.0191.03468forward
CNT30252168Triticum dicoccoidesAvena sativa62.862.9595.58520forward
CNT30685463Triticum dicoccoidesTriticum urartu100.3693.3798.92831forward
CNT30362790Triticum dicoccoidesSorghum bicolor56.1651.7292.9465forward
CNT30596822Triticum dicoccoidesOryza meridionalis50.8549.5392.64421forward
CNT30108137Triticum dicoccoidesOryza longistaminata49.451.8492.42409forward
CNT30103478Triticum dicoccoidesOryza rufipogon56.5248.1591.03468forward
CNT30117552Triticum dicoccoidesOryza nivara56.5249.1190.81468forward

Expression of CNT30664228

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGG

>peptide 2 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (35 aa)
MQHLPVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30664228
ACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACA
TGCAACATCTACCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTC
GGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGC
GTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTG
CGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGT
CGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCG
GTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAG
GCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGA
GGCTGGCAGTGGGAGGCGCTGGTGGTCG