« Back to Triticum aestivum search


Detailed information on CNT30297962


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Triticum aestivumOryza sativa66.0951.4590.87460forward
CNT30393211Triticum aestivumTriticum turgidum83.19100100579forward
CNT30554896Triticum aestivumOryza glaberrima66.0948.1790.87460forward
CNT30596822Triticum aestivumOryza meridionalis60.4949.5392.4421forward
CNT30108137Triticum aestivumOryza longistaminata58.7651.8492.18409forward
CNT30103478Triticum aestivumOryza rufipogon66.0947.3390.87460forward
CNT30117552Triticum aestivumOryza nivara66.0948.2790.65460forward

Expression of CNT30297962

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30297962
AGTTAACCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTC
GACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCA
GCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCG
AGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGA
ACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGC
GAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCG
AGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCG