CANTATAdb - search

Detailed information on CNT30252168

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696223	Avena sativa	Oryza sativa	55.81	51.57	89.8	461	forward
CNT30186748	Avena sativa	Secale cereale	65.38	64.06	93.7	540	forward
CNT30298565	Avena sativa	Triticum aestivum	64.65	61.73	92.88	534	forward
CNT30554896	Avena sativa	Oryza glaberrima	55.81	48.27	89.8	461	forward
CNT30664228	Avena sativa	Triticum dicoccoides	62.95	62.8	95.58	520	forward
CNT30685463	Avena sativa	Triticum urartu	62.95	58.43	95.38	520	forward
CNT30362790	Avena sativa	Sorghum bicolor	65.98	60.62	89.36	545	forward
CNT30596822	Avena sativa	Oryza meridionalis	51.94	50.47	90.44	429	forward
CNT30108137	Avena sativa	Oryza longistaminata	48.79	51.08	90.82	403	forward
CNT30103478	Avena sativa	Oryza rufipogon	55.81	47.43	89.8	461	forward
CNT30117552	Avena sativa	Oryza nivara	55.81	48.37	89.59	461	forward

Expression of CNT30252168

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAIAR*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

Sequence

>CNT30252168
TTAAGCAGAAGAAGAAAAGATGCCTTGATGAATAACCATAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATC
TATCAGTGACGACACACACATGCAGCAGCAGCAGCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGACGCAGCACACGCTAGAGGTTGAGCTTAC
TAATAAGCTCTTACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGGGCGTGCACGAGGCTGGG
GTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCTGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCG
GGGAAGACGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGG
CGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTGGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCA
GGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTG
CCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGTAGA
TGGTGGTGTGTGTTGGTGCTGTGGAG