Detailed information on CNT30556378


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GSM2|LOX23_HORVU, E-value = 2e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184310Panicum halliiSecale cereale15.0423.6387.96108forward
CNT30140604Panicum halliiLolium perenne30.6439.4388.64220forward
CNT308024Panicum halliiZea mays23.8270.3793.57171forward
CNT30721720Panicum halliiTriticum spelta19.6426.2181.56141forward
CNT30364445Panicum halliiSorghum bicolor36.6323.8793.16263forward
CNT30150536Panicum halliiBrachypodium distachyon16.7122.985120forward
CNT30104618Panicum halliiOryza rufipogon15.3239.7187.27110forward

Expression of CNT30556378

Peptides detected in this lncRNA

>peptide 1 (79 aa)
RDGLHLRGEHVQQRRFRRLPELLHLVFPVLLNRHVLPDRGGAVGEVAAEVVLPEVDGGVVAGGDPYDGGERLHEAVAGV*

>peptide 2 (50 aa)
MMVVSVSTRLSRVSSTGHHGSSFLSAWPTVRTSSQKACSSGSAATASSDL*

>peptide 3 (46 aa)
TVMACICVGSMSSSVASGASRNFFISSSRFSSTGMFFRIVVGRLGK*

Sequence

>CNT30556378
ACCGTGATGGCCTGCATCTGCGTGGGGAGCATGTCCAGCAGCGTCGCTTCCGGCGCCTCCCGGAACTTCTTCATCTCGTCTTCCCGGTTCTCCTCAACCG
GCATGTTCTTCCGGATCGTGGTGGGGCGGTTGGGGAAGTAGCCGCCGAAGTGGTACTGCCCGAAGTTGACGGCGGAGTGGTGGCCGGAGGTGACCCATAT
GATGGTGGTGAGCGTCTCCACGAGGCTGTCGCGGGTGTCTAGCACGGGCCACCACGGCTCGTCCTTCTTGTCGGCGTGGCCCACCGTGCGCACCTCCTCC
CAGAAAGCCTGCAGCTCGGGGTCGGCGGCGACGGCCTCGTCGGACTTGTAGTACACGTTGACGTAGTCCGCCGCCCACTGCTTGATGGAGTCCCAGATCA
TGAGCCCGTCGTGGGCATAGGGGTAGTCCTTGATGGTGAGCTCCAGCTCGCCGTCGTCGTTGGGCAGCGCTTCCGTGTCGAACTGCCACGTGGCGCCGTA
GGCCACGGAGCTGAGCTCGACGGAGTACTTGCCCGGCCAGAAGGCCTGCTCGATGATGCCGTCGGCGTTGATGAGGCTCTCCCTGGCCAGCGCGTTGATC
TCCATGGTGTAGCGGAAGTGCGGGTGCAGGAGGCGGTAGACGGGGTGCAGCCGGCTGAGCTGCCGGTTGGCGGCGATGATGTAGGGCTCGACGCAGCAGT
GGGTGCGCAGCCAGTGGC