Detailed information on CNT308024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GSM2|LOX23_HORVU, E-value = 1e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697668Zea maysOryza sativa35.3911.5986.0586forward
CNT30591741Zea maysMusa acuminata37.4518.3184.6291forward
CNT30246978Zea maysAvena sativa21.8111.8388.6853forward
CNT30556378Zea maysPanicum hallii70.3723.8293.57171forward

Expression of CNT308024

Peptides detected in this lncRNA

>peptide 1 (40 aa)
RFLRSSSVVSGCLRNFSISSPGPPSSTGMFFRMVVGRLGK*

>peptide 2 (80 aa)
AVLEVQQRRLRLLEELLHLLARPALLHRHVLPDGGRPVGEVAGEVVLAEVDGRVVAGGDPHDGGQRLHQAVAGVQHGPPRL

Sequence

>CNT308024
GCGGTTCTTGAGGTCCAGCAGCGTCGTCTCCGGCTGCTTGAGGAACTTCTCCATCTCCTCGCCCGGCCCGCCCTCCTCCACCGGCATGTTCTTCCGGATG
GTGGTCGGCCGGTTGGGGAAGTAGCCGGCGAAGTGGTACTGGCCGAAGTTGACGGCCGAGTGGTGGCCGGAGGTGACCCACATGATGGTGGTCAGCGTCT
CCACCAGGCTGTCGCGGGTGTCCAGCACGGGCCACCACGGCTC