Detailed information on CNT30184310


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224692Secale cerealeHordeum vulgare26.4854.0291.74121forward
CNT30140604Secale cerealeLolium perenne27.5722.5881.75126forward
CNT30364445Secale cerealeSorghum bicolor26.711.0786.07122forward
CNT30104657Secale cerealeOryza rufipogon62.8100.780.14287forward
CNT30556378Secale cerealePanicum hallii23.6315.0487.96108forward

Expression of CNT30184310

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAIGRSVPSSVRKKRAREPYKVVSSSLRTLCTYGSSKSW*

>peptide 2 (47 aa)
EAEVWVQQAVDGVHLAELPVGSDDVGLGAGVRPQPVANELVDAGVMS*

>peptide 3 (71 aa)
MGLGQLPQPGPRDAAVASRCEYLAPLRLALGLGPGQLDGDRAERAVVGEEEEGARAVQGGIVKLADLVYVW*

Sequence

>CNT30184310
GTGAAGCGGAAGTGTGGGTGCAGCAGGCGGTAGATGGGGTGCATCTGGCTGAGCTGCCGGTTGGCAGCGATGATGTAGGGCTCGGTGCAGGCGTGCGTCC
TCAGCCAGTGGCTAACGAGCTGGTGGACGCCGGCGTCATGAGCTAGGACATGGGCCTTGGCCAGCTGCCACAGCCAGGACCCCGTGACGCTGCCGTCGCA
TCCAGGTGTGAATACCTGGCGCCACTGCGGCTTGCGCTTGGACTTGGGCCTGGTCAGCTCGATGGCGATCGGGCGGAGCGTGCCGTCGTCGGTGAGGAAG
AAGAGGGCGCGCGAGCCGTACAAGGTGGTATCGTCAAGCTTGCGGACCTTGTGTACGTATGGTAGCAGCAAGTCGTGGTAGTCCACCATGAACAACTTCT
TGTTTGCGCGGGCCTCCTCAACTGTCATGACACGTCTGATCTGCTCTTCAATCAGCT