Detailed information on CNT30721720


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76I22|LOX1_ORYSJ, E-value = 6e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440717Triticum speltaAegilops tauschii28.0734.1698.68151forward
CNT30247547Triticum speltaAvena sativa49.8129.2386.19268forward
CNT305261Triticum speltaZea mays29.1856.8892.36157forward
CNT30344859Triticum speltaEragrostis tef40.3332.7886.18217forward
CNT30364445Triticum speltaSorghum bicolor34.216.782.07184forward
CNT30556378Triticum speltaPanicum hallii26.2119.6481.56141forward

Expression of CNT30721720

SRR9114152: 0.38 RPKM

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MGLTPASISLANSSSVIHAFSSALMICGLGSLRRKSPPMGMRSLTSWSGKRLRTSSRAGMLGSLMPPS*

>peptide 2 (93 aa)
GEVPVLVDHGGHGHGVLAREHGHLDDAAGVDEQPPRPRVDVHGVAVVRVQELVHRVGHAELPVGGDDEGLHHGVRVEPVADQLVPAVVVHGGV*

>peptide 3 (37 aa)
MEDMGMACLRGNTVISMTPPALMSSPRARALMFMVSR*

Sequence

>CNT30721720
TCGGTGAAGTTCCAGTTCTTGTAGACCATGGAGGACATGGGCATGGCGTGCTTGCGCGGGAACACGGTCATCTCGATGACGCCGCCGGCGTTGATGAGCA
GCCCCCGCGCCCGCGCGTTGATGTTCATGGTGTCGCGGTAGTGCGGGTGCAGGAGCTTGTACACCGGGTGGGTCACGCTGAGCTGCCGGTTGGTGGCGAT
GACGAAGGGCTCCATCACGGCGTGCGTGTTGAGCCAGTGGCTGATCAGCTGGTGCCAGCCGTAGTCGTTCACGGAGGCGTTTGATCATCATGGGGTTGAC
GCCGGCGAGCATCTCCCTGGCGAACTCCTCGTCGGTCATCCATGCCTTCTCGTCGGCTTTGATGATCTGCGGCTTGGGGAGCTTGAGGAGGAAGTCGCCG
CCCATGGGGATGAGGTCCTTGACGAGCTGGAGCGGGAAGCGCTTGCGCACCTCCTCCAGGGCGGGGATGTTGGGCAGCTTGATGCCGCCCTCGTAGAGCT
TGAGGATGTCGGCGAAGGAGTCGAACTCGCCGGGGGAG