Detailed information on CNT30102863


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 3e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Oryza rufipogonOryza sativa90.4697.7499.34910forward
CNT30554723Oryza rufipogonOryza glaberrima56.4641.6198.77568forward
CNT30596737Oryza rufipogonOryza meridionalis38.3763.4996.63386forward
CNT30370946Oryza rufipogonOryza glumipatula56.3645.8499.47567forward
CNT30150529Oryza rufipogonBrachypodium distachyon12.2330.5285.37123forward
CNT30577292Oryza rufipogonOryza barthii56.3651.0899.12567forward

Expression of CNT30102863

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MASFHCMLLFFSSDILIESYRWRAPSPWPRGWARS*

>peptide 2 (34 aa)
MHPDSCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 3 (37 aa)
MHTPQKKKKETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 4 (62 aa)
MMVLCHGSDRCCSRLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 5 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

Sequence

>CNT30102863
GATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCT
CACCCATGCATCCAGATTCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCC
AATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAAAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGA
ACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGG
TGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACAT
CAACAAAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTCTGATATATTGATAGAATCGTACCGTTGGCGAGCTCCTTCTCCTT
GGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGG
TTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGT
AGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGTCTCGTAGTCGGTGCGCGGGCGAGGCGGGTGGAGGATTGCCC
TAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCCACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGG
AGGAAG