CANTATAdb - search

Detailed information on CNT3080912

BLAST search results

BLAST vs Swiss-Prot:
sp|Q94JS0|UCRI1_ARATH, E-value = 3e-155

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30378397	Brassica juncea	Arabidopsis thaliana	75.71	74.65	89.15	636	forward
CNT30538058	Brassica juncea	Brassica napus	62.62	71.18	92.59	526	forward
CNT30235076	Brassica juncea	Brassica oleracea	78.45	81.97	92.11	659	forward
CNT30259922	Brassica juncea	Brassica rapa	81.67	80.33	93.44	686	forward
CNT30355976	Brassica juncea	Lactuca sativa	20.83	40.6	80.57	175	forward
CNT30114546	Brassica juncea	Eutrema salsugineum	76.07	88.26	90.45	639	forward

Expression of CNT3080912

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRTMTRTKPTAIITSIRQRDASQVSANSYHH*

>peptide 2 (59 aa)
MSSSVLLLMNTGFPRHFTVTVVPGSMLPRSTSRDASARTSLLADMLTMSFRTRRRRTEA*

>peptide 3 (42 aa)
TMNRESFIIIEKQSSSTRSINMTKVSIIQQKQDNLALNIAGL*

>peptide 4 (36 aa)
YEQRVFHHYRKTELEYTFNKYDKGFNYSAKTRQSCS*

Sequence

>CNT3080912
ACTATGAACAGAGAGTCTTTCATCATTATCGAAAAACAGAGCTCGAGTACACGTTCAATAAATATGACAAAGGTTTCAATTATTCAGCAAAAACAAGACA
ATCTTGCTCTTAACATTGCCGGATTATAGGAAAAAAAAAAGAAAAGAAACAAAACAGATGTAGTTCGCTGACTGTTGTGCTTTTTATTCATCATCAACCA
ATGAGTAACTTATTCTCTTCCAAGAAGCTGTAGGTTGGTACCTCCAGGTTGTACGGTGCAGGACCTTTCCTAATCCTTCCAGAGATATCATAATGCGAAC
CATGACACGGACAAAACCAACCGCCATAATCACCAGCATTCGGCAAAGGGATGCATCCCAAGTGAGTGCAAACTCCTACCACCACTAACCACTCCGGATT
CTTGACCCTCACCGAGTCTTCTTGCGGGTCTCTCAAAGATCCAAGATCCACGCTGTTAGCCAACTTGATGTCATCTTCTGTTCTTCTCCTGATGAACACC
GGCTTTCCACGCCACTTCACCGTGACAGTAGTTCCCGGCTCGATGCTCCCGAGGTCGACCTCGAGGGATGCAAGTGCAAGGACATCTTTACTTGCGGACA
TGCTGACAATGAGCTTCAGAACAAGAAGGCGGAGAACAGAGGCGTAGACAAACCTCCCACCGGACAGGACGAAATAGGCGAATGCACGCTTGCTAGGGTC
ACCAGGTGGGTAACGCTCATGGTTGTGGTCGTCATAGACAATCTTTGAGTTAGGTGTCTTGACAGCCTCCACGGTGGCTGGGACTTCAGAAGCAAAACCT
ACCTCATTTCCTTGGGTAAGGACTTGAGAAGAGAAACCTG