Detailed information on CNT3053027


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Amborella trichopodaSetaria viridis87.335.4683.6378forward
CNT30520996Amborella trichopodaSetaria italica84.5329.3784.15366forward
CNT30377782Amborella trichopodaArabidopsis thaliana85.6836.7383.56371forward
CNT30274113Amborella trichopodaChenopodium quinoa87.360.5884.39378forward
CNT30237858Amborella trichopodaBrassica oleracea43.6542.2888.36189forward
CNT30311981Amborella trichopodaCamelina sativa76.9184.7383.48333forward
CNT30600411Amborella trichopodaFraxinus excelsior81.5288.0386.4353forward

Expression of CNT3053027

Peptides detected in this lncRNA

>peptide 1 (74 aa)
TWAVKLAASLAGSSLELESLLKSLMVHLNRLNFSGEPRRGKCDNHTRLKDTSLHSAHRDSPNTSNLVDILKWET*

>peptide 2 (57 aa)
MSRASSKVGGPLDHVVTLKPRDGYKGDLIRVVSNLLDVRGHFLRNFFISGLGVLRGGG

>peptide 3 (45 aa)
MASWAPRSCQELRARLVDLSIMLSPSNPEMGTKGILSGLYPTFLM*

>peptide 4 (30 aa)
LGCEVSSLLGRVILGVGEPLEEPHGASQQT*

Sequence

>CNT3053027
ACCTGGGCTGTGAAGTTAGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGAGCCTCTTGAAGAGCCTCATGGTGCATCTCAACAGACTTAACTTCA
GTGGTGAGCCCAGAAGGGGCAAATGTGACAACCATACCAGGCTTAAGGACACCAGTCTCCACTCGGCCCACAGGGACAGTCCCAATACCTCCAATCTTGT
AGACATCCTGAAGTGGGAGACGTAGGGGCTTGTCAGATGGCCTCTTGGGCTCCGAGATCATGTCAAGAGCTTCGAGCAAGGTTGGTGGACCTCTCGATCA
TGTTGTCACCCTCAAACCCAGAGATGGGTACAAAGGGGATCTTATCAGGGTTGTATCCAACCTTCTTGATGTAAGAGGACACTTCCTTCGTAATTTCTTC
ATATCTGGCCTTGGAGTACTTCGGGGTGGTGGC