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Detailed information on CNT30600411


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 2e-67

BLAST vs NONCODE:
NONMEST004097, E-value = 4e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Fraxinus excelsiorSetaria viridis92.2734.7186.76370forward
CNT30520996Fraxinus excelsiorSetaria italica92.2729.787.3370forward
CNT30639730Fraxinus excelsiorNymphaea colorata52.8723.0787.26212forward
CNT30377782Fraxinus excelsiorArabidopsis thaliana99.7539.684.75400forward
CNT30274113Fraxinus excelsiorChenopodium quinoa96.0161.785.45385forward
CNT3020493Fraxinus excelsiorCitrullus lanatus87.0322.688.54349forward
CNT30311981Fraxinus excelsiorCamelina sativa93.2795.1784.76374forward
CNT3015866Fraxinus excelsiorZea mays92.0251.3986.18369forward
CNT30355420Fraxinus excelsiorLactuca sativa88.2851.4586.72354forward
CNT30151899Fraxinus excelsiorPrunus persica9935.9986.4397forward
CNT3053027Fraxinus excelsiorAmborella trichopoda88.0381.5286.4353forward
CNT30723969Fraxinus excelsiorLupinus angustifolius95.0135.3185.83381forward

Expression of CNT30600411

Peptides detected in this lncRNA

>peptide 1 (55 aa)
PTLSPGRASWRASWCISTDLTSVVKPVGPKVTTIPGLITPVSTRPTGTVPIPPIL*

>peptide 2 (67 aa)
PNIVTGESLLEGLMVHFNRLDFSCQTSWAEGDNHTRLDNTSLNTADGDSSNTTNLVDILKWETERLV*

Sequence

>CNT30600411
CCCAACATTGTCACCGGGGAGAGCCTCCTGGAGGGCCTCATGGTGCATTTCAACAGACTTGACTTCAGTTGTCAAACCAGTTGGGCCGAAGGTGACAACC
ATACCAGGCTTGATAACACCAGTCTCAACACGGCCGACGGGGACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGGAGAGGCTTGT
CTGAGGGTCTCTTGGGCTCCAGAATCTGGTCAAGAGCGTCGAGGAGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATGGGGACAA
ATGGAATCTTGTCAGGGTTGTATCCGACCTTCTTGATGTAGGATGACACTTCCTTCACAATTTCATCATACCTAGACTTCGAGTATTTAGGCGTAGTGGC
A