Detailed information on CNT30520996


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 8e-153

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Setaria italicaNymphaea colorata47.1963.9886.22588forward
CNT30377782Setaria italicaArabidopsis thaliana67.0182.6785.39835forward
CNT30274113Setaria italicaChenopodium quinoa49.0497.9285.6611forward
CNT30629525Setaria italicaVigna unguiculata30.9889.7787.56386forward
CNT30121467Setaria italicaPhyscomitrium patens36.7669.0882.31458forward
CNT30146334Setaria italicaMedicago truncatula52.5765.986.11655forward
CNT30600411Setaria italicaFraxinus excelsior29.792.2787.3370forward
CNT30608730Setaria italicaGossypium raimondii36.127586450forward
CNT30127375Setaria italicaCorymbia citriodora41.9793.7388.34523forward
CNT30151899Setaria italicaPrunus persica38.5243.5287.08480forward
CNT30424546Setaria italicaPapaver somniferum67.8271.5584.97845forward
CNT3053027Setaria italicaAmborella trichopoda29.3784.5384.15366forward
CNT30148140Setaria italicaBrachypodium distachyon30.0298.4292.78374forward
CNT30101006Setaria italicaOryza rufipogon32.0257.3393.98399forward
CNT30116376Setaria italicaOryza nivara19.8245.4992.71247forward
CNT30723969Setaria italicaLupinus angustifolius61.6471.1886.2768forward

Expression of CNT30520996

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30520996
CCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGA
CCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAG
CAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGAAATAACAAAACAGTACTAGTACAATTGACCAAGGCGCACTTTGCCTGCAAAGAGT
TCAAACGATAACAGAAATGGCCATGGACAAAAAATAAGACATGATATAGAGCATCTAAGTCTCCCAAAAGTAGACACATAATCAACCACCAGACACATCA
TTTCTTCTTGGCTGCAGCCTTGGTCACCTTGGCGCCTGTTGGGTCCTTCTTCTCCACACTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGG
ACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGA
ACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCAC
TGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAG
GCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCT
CAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCC
AATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTT
GGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAGGCAATCTTGTCAGGGTTGTATCCCACCTTCTTCAGGTAGGAGGAGACT
TCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGG