Detailed information on CNT30672814


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 8e-154

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Setaria viridisOryza sativa65.144.0692.65694forward
CNT30521201Setaria viridisSetaria italica99.1698.2399.241057forward
CNT30639730Setaria viridisNymphaea colorata55.1663.9885.2588forward
CNT30377782Setaria viridisArabidopsis thaliana79.1783.5685.31844forward
CNT30274113Setaria viridisChenopodium quinoa58.1699.3685.81620forward
CNT30541587Setaria viridisBrassica napus65.6759.5286700forward
CNT30173274Setaria viridisTrifolium pratense66.3252.5785.29707forward
CNT30146334Setaria viridisMedicago truncatula61.4465.985.8655forward
CNT3059230Setaria viridisArabidopsis lyrata65.6758.2486.43700forward
CNT3077051Setaria viridisBrassica juncea65.6760.6686.57700forward
CNT30611975Setaria viridisArabis alpina63.0450.3484.97672forward
CNT30600411Setaria viridisFraxinus excelsior34.7192.2786.76370forward
CNT30132437Setaria viridisLolium perenne65.8558.486.61702forward
CNT3011166Setaria viridisZea mays66.325092.79707forward
CNT30127375Setaria viridisCorymbia citriodora49.0693.7388.34523forward
CNT30350898Setaria viridisEragrostis tef65.5762.7590.56699forward
CNT30368495Setaria viridisSorghum bicolor66.3269.3892.22707forward
CNT30151899Setaria viridisPrunus persica46.0644.5186.97491forward
CNT30424546Setaria viridisPapaver somniferum80.0272.2384.64853forward
CNT3053027Setaria viridisAmborella trichopoda35.4687.383.6378forward
CNT3024315Setaria viridisPopulus trichocarpa59.5783.2285.67635forward
CNT30148140Setaria viridisBrachypodium distachyon35.0898.4292.25374forward
CNT30496833Setaria viridisDigitaria exilis83.8680.8392.62894forward
CNT30603788Setaria viridisOryza punctata65.4859.2592.98698forward
CNT30723969Setaria viridisLupinus angustifolius72.0571.1886.2768forward

Expression of CNT30672814

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30672814
AATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGACCGAGGACACATTGCCAGC
TGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCAC
CAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCC
TCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTAGTGGGAATCATCTTCACCATACCAGCATCACC
ATTCTTCAGGAACTTGGGTTCCTTCTCAAGCTCCTTACCAGATCGTCTGTCAATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGG
CAGTCCAGCACTGGGGCGTAGCCATTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCT
TGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTC
GTGGTGCATCTCGACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACA
GGGACGGTTCCAATACCACCGATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCT
CAAGCAGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAGGCAATCTTGTCAGGGTTGTATCCCACCTTCTTCAGGT
AGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGGTGGCATCCA