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Detailed information on CNT30524716


BLAST search results

BLAST vs Swiss-Prot:
sp|P25856|G3PA1_ARATH, E-value = 2e-55

BLAST vs NONCODE:
NONMTRT001777, E-value = 1e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676566Phaseolus vulgarisSetaria viridis21.4635.2983.33168forward
CNT30524158Phaseolus vulgarisSetaria italica21.4622.2883.33168forward
CNT30698911Phaseolus vulgarisQuercus lobata14.341.6490.18112forward
CNT30372815Phaseolus vulgarisArabidopsis thaliana14.4340.3685.84113forward
CNT30268339Phaseolus vulgarisChenopodium quinoa76.6373.7179.5600forward
CNT30729008Phaseolus vulgarisCorchorus capsularis36.0252.9185.82282forward
CNT30381182Phaseolus vulgarisManihot esculenta30.7860.7185.89241forward
CNT30628637Phaseolus vulgarisVigna unguiculata47.2543.1791.89370forward
CNT30196808Phaseolus vulgarisPisum sativum8.5628.2792.5467forward
CNT3093146Phaseolus vulgarisSolanum tuberosum13.4130.3588.57105forward
CNT30541340Phaseolus vulgarisBrassica napus22.6127.6685.88177forward
CNT30509382Phaseolus vulgarisSolanum lycopersicum33.7241.3182.95264forward
CNT30243463Phaseolus vulgarisAvena sativa26.4439.5881.64207forward
CNT302683Phaseolus vulgarisZea mays16.3531.6880.47128forward
CNT30572796Phaseolus vulgarisVitis vinifera35.8953.2286.48281forward
CNT30119382Phaseolus vulgarisCitrus clementina20.5617.7183.23161forward
CNT30585204Phaseolus vulgarisEchinochloa crusgalli20.6932.0282.72162forward
CNT3065586Phaseolus vulgarisSelaginella moellendorffii9.4530.8386.4974forward

Expression of CNT30524716

Peptides detected in this lncRNA

>peptide 1 (41 aa)
CTMRRERKLMVVFLSSCLEGMKQQKCCSSSSKHTKLQWHGT*

>peptide 2 (59 aa)
MSSPITMVNEESTVEDTSVHLKSTDTRGSSQTERIPFSSFSALSLNAAFTSSAKVFFET*

>peptide 3 (45 aa)
MAITSRGDSLRPCQHLKKFLPILPNPFMATFSFASTTTFLYPPLFP

>peptide 4 (79 aa)
MLHSLLLQRSSLRPEQQGLLLRHLGLAHAVQCHSVCLSGLAGFRSETTLISFPSTEMISLPTGLTTASKVPRMESYLRR*

Sequence

>CNT30524716
TGCACAATGAGAAGGGAGAGAAAATTGATGGTTGTGTTTCTCAGTAGTTGTTTAGAAGGAATGAAGCAACAAAAGTGTTGTAGTAGTAGTAGTAAGCATA
CAAAATTACAATGGCATGGTACATGATTAATTACCAATGAGCTTTTGATCACTTCCATTTGTTGGCAACAATGTCAGCCAAATCCACAACCCTTTGGGAG
TAACCCCACTCGTTGTCATACCATGCAATCACCTTCACCATGTCATCTCCCATCACCATGGTCAACGAGGAGTCAACGGTTGAGGACACATCAGTGCACC
TGAAGTCAACAGACACAAGAGGCTCATCACAGACTGAGAGGATTCCCTTCAGCTCCTTCTCTGCACTCTCTCTGAATGCTGCATTCACTTCTTCTGCAAA
GGTCTTCTTTGAGACCTGAACAACAAGGTCTACTACTGAGACATTTGGGGTTGGCACACGCAGTGCAATGCCATTCAGTTTGCCTTTCAGGGTTGGCAGG
GTTTCGATCAGAGACAACTTTGATTTCTTTTCCATCAACTGAGATGATATCACTCCCTACAGGCTTGACAACAGCATCGAAGGTTCCAAGGATGGAATCA
TATTTGAGGAGGTGAGAGGCTTGTTTCACACCACCAGTGTCATTGATGGCAATCACATCAAGAGGGGACTCTTTACGACCGTGCCAGCATCTCAAGAAGT
TCCTTCCAATCCTTCCAAATCCGTTTATGGCAACCTTCAGTTTTGCTTCTACTACAACCTTCTTGTATCCTCCACTGTTTCCA