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Detailed information on CNT30243463


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43247|G3PC3_MAIZE, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676190Avena sativaSetaria viridis56.9868.6691.61298forward
CNT30524158Avena sativaSetaria italica53.5437.1491.79280forward
CNT30698911Avena sativaQuercus lobata21.0340.8984.55110forward
CNT30729008Avena sativaCorchorus capsularis41.6840.983.49218forward
CNT30524716Avena sativaPhaseolus vulgaris39.5826.4481.64207forward
CNT30628637Avena sativaVigna unguiculata30.418.5583.02159forward
CNT30712586Avena sativaGlycine max39.5830.6781.16207forward
CNT30288286Avena sativaTriticum aestivum30.9828.4788.27162forward
CNT30385999Avena sativaTriticum turgidum30.9830.5188.27162forward
CNT3088037Avena sativaVigna radiata21.418.3383.93112forward
CNT30509382Avena sativaSolanum lycopersicum22.5618.4784.75118forward
CNT30658162Avena sativaTriticum dicoccoides30.9829.0888.27162forward
CNT30310642Avena sativaCamelina sativa21.221781.98111forward
CNT302683Avena sativaZea mays33.6543.5692.05176forward
CNT30622203Avena sativaCajanus cajan39.7724.1681.25208forward
CNT30357505Avena sativaLactuca sativa31.9325.380.84167forward
CNT30572796Avena sativaVitis vinifera23.923.6782.4125forward
CNT30585204Avena sativaEchinochloa crusgalli43.2144.6691.59226forward
CNT30558465Avena sativaPanicum hallii14.913992.3178forward
CNT3040034Avena sativaMarchantia polymorpha28.6815.5986.67150forward

Expression of CNT30243463

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTLTMSSPMTMLSDASMVEDTSEHLKSTDTSGSSQTSRMPLSSLAAASRWLASSSLWSPVYEWVVVIVPLMM

>peptide 2 (53 aa)
YRCTALRLPLPEVYSNNPCLDSEKSSEKKEEKKKKLLGVRYLELLSLQRIDHP*

Sequence

>CNT30243463
ATTACAGATGCACAGCGTTGAGACTTCCTTTGCCGGAAGTCTATAGTAATAATCCGTGTCTGGACAGTGAAAAATCATCAGAGAAAAAAGAAGAAAAGAA
AAAGAAACTGTTGGGAGTTCGATACTTGGAATTATTATCATTACAAAGAATCGATCATCCGTGAAGAAGGGTGGGGAAAATCTCAAGAGGAGTACGTCAC
AGGGCAATAATGCCGCTGTTGGGCGTTCACTTCCATTGGTTGGCAACAATGTCGGCGAGGTCGACGACCCTCTGCGAGTAACCCCACTCGTTGTCGTACC
AGGCGATGACCTTGACCATGTCGTCTCCCATGACCATGCTGAGCGACGCGTCGATGGTGGAGGACACGTCGGAGCACCTGAAGTCGACTGACACGAGCGG
CTCGTCGCAGACGTCGAGGATGCCCTTGAGCTCGTTGGCGGCGGCGTCGCGGTGGCTCGCGTCGAGCAGCCTCTGGTCACCGGTGTACGAGTGGGTGGTG
GTCATCGTCCCCTTGATGATGCC