Detailed information on CNT302683


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676566Zea maysSetaria viridis47.2840.1393.19191forward
CNT30524158Zea maysSetaria italica47.2825.3393.19191forward
CNT30729008Zea maysCorchorus capsularis29.4622.3384.03119forward
CNT30524716Zea maysPhaseolus vulgaris31.6816.3580.47128forward
CNT30628637Zea maysVigna unguiculata29.4613.8982.35119forward
CNT30712586Zea maysGlycine max31.6818.9682.03128forward
CNT30221009Zea maysHordeum vulgare2517.7596.04101forward
CNT30509382Zea maysSolanum lycopersicum23.5114.8783.1695forward
CNT30243463Zea maysAvena sativa43.5633.6592.05176forward
CNT30231796Zea maysAnanas comosus2526.7988.12101forward
CNT30215929Zea maysHelianthus annuus2510.7185.15101forward
CNT30622203Zea maysCajanus cajan29.4613.8281.51119forward
CNT30357405Zea maysLactuca sativa24.514.1483.8499forward
CNT30585204Zea maysEchinochloa crusgalli44.3135.3893.3179forward
CNT3040034Zea maysMarchantia polymorpha28.9612.1693.16117forward

Expression of CNT302683

Peptides detected in this lncRNA

>peptide 1 (66 aa)
YIRTTSPKRVNFTESESFRGESQSPVEGEELQSAITMQRFTSTGWRRCQRGRRPSASSPTRCRTRR*

>peptide 2 (67 aa)
MTLTMSSPMTMVREASMVEETSEHLKSTDTSGTLLGLRSDTTLMTLPSTEMALSPTGLTSASKMPSVE

Sequence

>CNT302683
GGTATATTCGGACGACCTCGCCGAAACGGGTGAATTTCACCGAAAGTGAGTCATTTCGGGGTGAATCCCAAAGCCCTGTGGAGGGTGAGGAGTTACAAAG
TGCTATTACAATGCAACGCTTCACTTCCACTGGTTGGCGCAGATGTCAGCGAGGTCGACGACCCTCTGCGAGTAGCCCCACTCGTTGTCGTACCAGGAGA
TGACCTTGACCATGTCGTCGCCCATGACCATGGTGAGGGAGGCGTCGATGGTGGAGGAGACGTCGGAGCACCTGAAGTCGACGGACACGAGCGGCACGTT
GCTGGGGTTGCGGTCGGACACGACCTTGATGACCTTGCCGTCGACGGAGATGGCGTTGTCGCCGACGGGCTTGACGTCGGCGTCGAAGATGCCGAGCGTG
GAGT