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Detailed information on CNT30676230


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523916Setaria viridisSetaria italica71.1372.197.04473forward
CNT30680746Setaria viridisTriticum urartu58.9550.7189.29392forward

Expression of CNT30676230

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MWHLQLPEQAQMPCASPSCLPLERHCRMQRTCGSGTCPGAASHRTLMHLRTPLLLPLLVGHPAPLPAPGHACAHSSSLLAHLVQRPS

>peptide 2 (56 aa)
MPAPGASLSNAKDLRLRYMSWSCFSSDPDAFENTLVAASLSGTPSSSACSWACLRT*

Sequence

>CNT30676230
TTTACCGGTCAATGCCCTCAATCTTGTCTTCAACCTCTGAGTAGAGCTCCCTGAGCTTTTCCAAATTCTCCTCTGACGTCTCCCAATAGCCTCTGCCGCT
GGCTTCTAGGAAGGTCTGGACCAGCTTCCTGAATGAGTTGGGGTTGGTCTCCATGAGCCTCTTCCTCATCGCCTCATCTTCAATGAATGTGGAATTTGCC
TCCTCATAAACCCAGTTGTCAACTTGTCCGGATGTTGCACTCCACCCAACAGTGTTTGTGAGCCGCTTCTCGATCTCTCTAACTCCCTCATAGCCGCTCT
TCATCATCCCCTCATACCACTTTGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTCTCCGACAGTGTTCTCACCTGTGCATTTGCTGTGGTTCT
GGAATGTGGCATCTGCAGTTGCCAGAGCAAGCTCAAATGCCTTGCGCTTCTCCTTCATGCCTGCCCCTGGAGCGTCACTGTCGAATGCAAAGGACTTGCG
GCTCAGGTACATGTCCTGGAGCTGCTTCTCATCGGACCCTGATGCATTTGAGAACACCCTTGTTGCTGCCTCTCTTAGTGGGACACCCAGCTCCTCTGCC
TGCTCCTGGGCATGCTTGCGCACATAGTTCATCTCTACTGGCTCATCTAGTTCAGCGACCATCTT