Detailed information on CNT30521915


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692301Setaria italicaOryza sativa4.2623.5384.56136forward
CNT30677663Setaria italicaSetaria viridis8.8710098.59283forward
CNT30247997Setaria italicaAvena sativa3.8957.1484.68124forward
CNT3016428Setaria italicaZea mays3.1326.5386100forward
CNT30361544Setaria italicaSorghum bicolor18.0960.882.67577forward
CNT30575899Setaria italicaOryza barthii5.1130.5884.05163forward
CNT30585612Setaria italicaEchinochloa crusgalli9.7856.2283.33312forward
CNT30550784Setaria italicaOryza brachyantha3.3233.9783.02106forward

Expression of CNT30521915

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGPEQSQQDPCSARLSLAPCHLTLLLQTTKVIQLHT*

>peptide 2 (35 aa)
MSIAGTLFSDLGDELGHSHSRSLLLFDASTSSVFC*

>peptide 3 (46 aa)
ISHVSEADAEAVVRFSGAVDVNIELSTRGSLLSDLGVKLGDSRPIS*

>peptide 4 (46 aa)
MGLNMHFQNLIYPASSFLRIVEKLQLFYTFSKCMIKSRITELPSRW*

>peptide 5 (40 aa)
MKGKPLIEENGYLKNLMQPPQVPFSDSQSSPSCLYLNQVN*

>peptide 6 (37 aa)
PFRMYRKQMQKLSLGFQVLLMLTLSCPQEVPYCRILE*

>peptide 7 (60 aa)
MKHVDSDEIPYYHVHYHSCGLWLDSIGLRCCDGGSIHQSILHVFHYGASLFAHMNSQEIE*

>peptide 8 (55 aa)
MNWDIHIPDLCYYLMHPPQVFFADSQNPPFCMYRKQVRKLSLDFRELLMLKLNCP*

>peptide 9 (52 aa)
MNRPTGRLWQEKGSCKLHNKLSLKQKSILEEAKNRSRKDSSAIKKMRTRNIK*

>peptide 10 (30 aa)
MYCTLRVQFFWMVARIRNFLWMVLHSVWIF*

>peptide 11 (76 aa)
MHPRQVFSADSQSPPFCMYRRQEQKLPIDFQELLMLKVNCPKQEPYSQTLGMNWDIHIPDLCYYLIHPCQLFFADS*

Sequence

>CNT30521915
CCATTTCGCATGTATCGGAAGCAGATGCAGAAGCTGTCGTTAGGTTTTCAGGTGCTGTTGATGTTAACATTGAGTTGTCCACAAGAGGTTCCTTACTGTC
GGATCTTGGAGTAAAACTAGGAGATTCACGTCCAATATCTTGATAATCAGGACTAGTTACAGGGAAAATGTGAGAATGAGGAGGCTGATACAGTGGAGCA
TTTGATGCATCCGCGTCAAGTGTTTTCTGCTGATTCACAAAGTCCTCCATTTTGCATGTACCGGAGGCAGGAACAGAAGTTGCCGATAGATTTTCAGGAG
CTGCTGATGTTAAAAGTGAATTGTCCAAAGCAGGAACCTTATTCTCAGACCTTGGGGATGAACTGGGACATTCACATTCCAGATCTTTGTTATTATTTGA
TACATCCGTGTCAACTGTTTTTTGCTGATTCATAAAGCCCTCCATTTTGCATGTACCGGAAGCAGGTTCAGAAGTTGCTGTTAGATTTTCGGGAGCTGCT
GATGTTAAAAGTGAGATGTCCATAGCAGGAACCTTGTTCTCAGACCTTGGGGATGAACTGGGACATTCACATTCCAGATCTTTGTTATTATTTGATGCAT
CCACCTCAAGTGTTTTTTGCTGATTCACAAAACCCTCCATTTTGCATGTACCGGAAGCAGGTTCGGAAATTGTCGTTAGATTTTCGGGAGCTGCTGATGT
TAAAACTGAATTGTCCGTAGCAGGAACCTTATTCTCAGACCTTGGGGATGAACTGGGACATTCACATTCCAGATCTTTGTTATTAGGAGAAGATGAAGGG
GAAACCTTTGATTGAGGAGAATGGTTATCTGAAGAATTTGATGCAACCGCCTCAGGTACCTTTTTCCGACTCACAATCTTCTCCATCTTGCCTGTATTTG
AACCAGGTGAATTAGTACTAGTAACATTTTCAGGTGATGCTGGTGTTAACCCTGAGTTGTCAACCGCAAGCTCCTTATTCTCAGATCTTGGAGCTGGACT
AGGAACCTCACGGTCAATATCTTGGTTATCAGGAGAGGACACATGGAAAATCTTCGATTGGGGAGACTGATTAACTGAAGCATTGGATGTATCTGCTTCA
AGTGTTCTTTGCTGATTCATGATCTCATCCATCTTGCAAATATCGGAAGCAGACGCCAAAGGGGCTGAATGTGGACTGCAGATTGGAACACTTTCTGAGT
GACTCAGCATGCCAGATGGCGAACTAGAACCTCTGTCTTCAATAGGAGTTGCTGGAGCACAGCTCATAGACTTTGCAGAAGCAATAGAAGAATGAAGTTC
GTCAACAAAGTTTGGATTGGTTGTTGAACTTAAGCAAGAGCCTTCATGCTGACTTGAAGCGGTCCTGGACTCGGACGGACTCCAAGCAAACACAGGACTG
GAGACATCTTTCCCGACTCGTTGAGTAGGTAGATTTTTTGATAGATCCCGCCTTGAATTCAGATCTTTAACAGATCCACATTGTGAACTACCTTTAGAAT
CATGTTGACATTGCGACCATGAAACATGTTGATTCTGATGAGATTCCGTATTACCACGTCCACTACCACTCATGTGGGCTGTGGTTGGACTCCATAGGGC
TGCGCTGCTGTGACGGTGGTTCGATTCACCAGAGCATCCTCCATGTATTCCATTATGGTGCAAGTCTGTTTGCCCATATGAATTCCCAGGAGATTGAATA
AAAACTGAATGTTTTGTCTGGCACTGTGCTTGGCTATTCACAGTACGAACATCCTTGGGTGGAACCGAACTAGTTGACAGTGACAAGCTATCATCTGGAG
AGTACACACACTCTCTTTCTGGAGCATAATACTTATTAGACTGAACAGTTATTCCAGAAGAACCAGCCACACTATAACCAACAGGGGATAGAGCATTGGT
CTGATCCACACTTGGGCTGTTCATTGTATGTCTAGTGCCAGCCAATGTTACCTTGCTACTTGTAAGTGATGCAGCTTGATTAAAATCTTTCTGCTGTTTT
GAAAGCACTTCAGTCAACAGCAATGATCTCTCTTCACTCTCAAATGTTAGCCAAACTCTCAGATCACGTGGGAAGTAACTTGTCCACTTTGATAGCTGCA
AAAGAGTGAATGGGCCCTGAACAATCCCAGCAGGATCCTTGTAGTGCCAGACTTTCTCTGGCTCCGTGTCACTTGACATTGTTACTCCAGACGACGAAAG
TGATCCAGCTTCATACATAGAGCTGTTTGCTATAGTGTTGTTCTCAAACTTTCTTCCAGCTCCAGATCCATGTATTGTACTTTGCGAGTACAATTTTTTT
GGATGGTGGCTAGAATCAGAAACTTTTTGTGGATGGTTTTGCATAGTGTTTGGATATTTTGATTTTCTTCGTGATATGGACGTATCTGATCTTGTCCGAT
TTACAGACCTTCCAACTGCACGTAATAAACAAACAATACTCAAACACTAAAATTAATTAAAACTTAAATTAAGGAGTGTGATTAGAGTTGATGCTACTTG
CAACATCAATTCAAATCTTTTGTCAGGTCAATTGAAATGTTGCCATAGTATTCAGAAAAGGTTGCATTACATCTATGCAAGAAATTTACAATATAAAAAC
TTATACTAGAGGGTGAAATGATGCAAAACACCTAGTTACATTCTAATATTTATTACTGAACATAAAGCATTAACATTTTGCGAAGATAAATACCAGCTTT
TTTGTCATCCATTTCTTCGGCAGATTCATAATCAGGATCCATATGGGACTCAACATGCACTTCCAGAACCTCATTTATCCTGCGAGTTCTTTCCTCAGAA
TTGTTGAGAAGCTGCAGCTTTTCTACACATTCTCTAAGTGTATGATAAAGTCAAGGATCACAGAATTACCCAGCAGGTGGTAAAAGGTTAGTTCAGTGCC
GAAGTACTATAAGAAAAATAAAGCTGTCTTTGATTATCATGAATATTTTTTTTGAAAAAGTATCATGAATATTCATAAGTCCAGACCAAAGGATCACCAG
TTATTAGAAGCATGTCTCTAGCATGAACAGACCTACAGGAAGATTATGGCAAGAAAAAGGGAGCTGCAAATTGCATAATAAATTATCATTGAAGCAAAAA
TCTATTTTGGAAGAAGCGAAAAATAGATCCAGAAAAGATAGTTCAGCTATAAAAAAGATGAGGACCAGAAACATTAAGTAATAAAAGCAT