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Detailed information on CNT30585612


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677663Echinochloa crusgalliSetaria viridis20.3639.9385.84113forward
CNT30521915Echinochloa crusgalliSetaria italica56.229.7883.33312forward
CNT3016428Echinochloa crusgalliZea mays27.0339.7984.67150forward
CNT30361544Echinochloa crusgalliSorghum bicolor49.3728.8781.02274forward

Expression of CNT30585612

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHPRLLFFADSQTPPFCMYRKHVQKLPLDFQELLML

>peptide 2 (79 aa)
MYRKQMQKLALDFQVLLVLTLSCPQELPYCQVLFADSQTRPFCKYRKQMQKPSLEFQVPLMLTVSCPEEVPYCQIFELD*

>peptide 3 (38 aa)
SILHVSEADAEAVVRFSGAVGVNTELSRRASLLSSVFC*

Sequence

>CNT30585612
CCTCCATTTTGCATGTGTCGGAAGCAGATGCAGAAGCTGTAGTTAGATTTTCAGGTGCTGTTGGTGTTAACACTGAGTTGTCCAGAAGAGCTTCCTTACT
GTCAAGTGTTTTTTGCTGATCAACAAACTCCATTTTGCATGTATAGGAAGCAGATGCAGAAGCTGGCATTAGATTTTCAGGTGCTGTTGGTGTTAACACT
GAGTTGTCCACAAGAGCTTCCTTACTGTCAAGTGTTGTTTGCTGATTCACAAACTCGTCCATTTTGCAAGTATCGGAAACAGATGCAGAAGCCGTCGTTA
GAATTTCAGGTGCCGTTGATGTTAACAGTGAGTTGTCCAGAAGAGGTTCCTTACTGTCAAATCTTTGAGTTGGACTAGGACATTCACGGCCAATATCCTG
ATTAGGAAAAATCTGAGAATTAGGAGGCTGATGAAGTGGAGAATTTGATGCATCCACGTCTATTGTTTTTTGCTGATTCACAAACTCCTCCATTTTGCAT
GTATCGGAAGCATGTGCAGAAGTTGCCGTTGGATTTTCAGGAGCTGCTGATGTTA