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Detailed information on CNT30361544


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 5e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692536Sorghum bicolorOryza sativa19.3922.1782.07184forward
CNT30677663Sorghum bicolorSetaria viridis26.2487.9981.93249forward
CNT30521915Sorghum bicolorSetaria italica60.818.0982.67577forward
CNT3016428Sorghum bicolorZea mays32.6782.2388.71310forward
CNT30575899Sorghum bicolorOryza barthii15.727.9583.89149forward
CNT30585612Sorghum bicolorEchinochloa crusgalli28.8749.3781.02274forward
CNT30550784Sorghum bicolorOryza brachyantha10.4331.7384.8599forward

Expression of CNT30361544

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MYQRQKLSLAFQEQLMLKVNCPQQESYSRTLGLNWGIHVSYLRY*

Sequence

>CNT30361544
GGCTGATTAAGTGAAGCATTTGATGCATCCGCTTTAATTGGTCTTTGCTGATTCACAAACTCCTCCATTTTGCATGTACCAGAAGCAGATGTTGCTAGAA
TTTCAGGCGCCGCTGATGTAAATACTGAGTTGTCCATAAGAGGTTCCTTACAGTCAGACCTTGGAGTTGGGCTAGGACATTCATGCTCAATATCTTGATT
ATCAGAAGATACATTGAAAATGTGAGGAGGCTGATTAAGTGAAGCATTTGTTGCATCCGCTTCAAGTGCTTTTTGCTGATTCACAAACTCCTCCATTTTG
CATGTATCAGAGGCAGAAGTTGTCGCTAGCATTTCAGGAGCAGCTGATGTTGAAAGTAAACTGTCCACAGCAGGAATCTTATTCTCGGACCTTGGGGTTG
AACTGGGGTATTCATGTTTCATATCTTCGTTATTAGGAGAAGATACAGGGGAAACCTTGGATTGAGGAGAATGACTATCTGAAGAATTCAATACAACAGT
CCCAATTACTTGTTGCTGACTCACGGCCTCCATCTTGCATGTATCTGAACCAGGCAGATTCATAGTAATATTTTCATGTGATGCTGGTGTTAATCCTGAG
CTGTAAACTGCAGTGTCCTTATTCTCAGATCTTGGAACTGGACTAGGAAACTCACGGTCAGTATCTTGGTTATCAGGAGAGGATACAGGGAAAATCTTTG
ATTCTGGAGACTGGTTAACTGAAGCATTCGATGTATCCGCCTCGAGTGTTCTTTGCTGATTCATGATCTCCTCCATCTTGGACATATCAGAAACAGATGC
TGAAGGGGCTTTGCAGAAGCTATAGAAGAATGAAGTTCATCGAGAAAGCTTGGATTAGTTGTTGAACTTAAGCAAGAGCCTTCATGTTGACTTGAAGCTG
TCCTCGACTCGGCCGGACTCCAAGCAAACAAAGGACTGGATACATCTTT