Detailed information on CNT30550784


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692536Oryza brachyanthaOryza sativa99.3637.3587.1310forward
CNT30521915Oryza brachyanthaSetaria italica33.973.3283.02106forward
CNT30361544Oryza brachyanthaSorghum bicolor31.7310.4384.8599forward
CNT30105879Oryza brachyanthaOryza longistaminata86.223787.36269forward
CNT30575696Oryza brachyanthaOryza barthii93.9139.2887.71293forward
CNT30603920Oryza brachyanthaOryza punctata83.0143.1789.19259forward

Expression of CNT30550784

Peptides detected in this lncRNA

>peptide 1 (57 aa)
GYWRWIRVFMFNILVIRRRFRENLRLWRLLFTLRYWLWTRILTFNFLVIRRRFTVSP*

>peptide 2 (41 aa)
GIGGGLGCSCSISWLSGEDSGRILDCGDCSLLSDIGCGLGY*

Sequence

>CNT30550784
CGGGTATTGGAGGTGGATTAGGGTGTTCATGTTCAATATCTTGGTTATCAGGAGAAGATTCAGGGAGAATCTTAGACTGTGGAGATTGCTCTTTACTCTC
AGATATTGGTTGTGGACTAGGATATTGACGTTCAACTTCTTGGTTATCAGGAGAAGATTCACGGTTAGTCCTTGACTGTGGGGATAGCTCTTTACATTCA
GACATTGGAGGTGGACTAGGATATTCACGTTCAATATCTTGGTTATCAGGAGAAGATTCCGGGAGAATCTTAGAATTTGGAGACTGATTAACTGATGCAT
TTGATATATCAG