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Detailed information on CNT30692301


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 3e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521915Oryza sativaSetaria italica23.534.2684.56136forward

Expression of CNT30692301

Peptides detected in this lncRNA

>peptide 1 (31 aa)
FTLRYRSWARIFTLNILVIRRRFRENLRLQR*

>peptide 2 (62 aa)
LLLDIGVGLGSSHLISWLSEEDSGRILDCRDSSLLSGIGVGLEYSHLISWLSGEDSGRILDC*

Sequence

>CNT30692301
CTTTACTCTTAGATATCGGAGTTGGGCTAGGATCTTCACACTTAATATCTTGGTTATCAGAAGAAGATTCAGGGAGAATCTTAGACTGCAGAGATAGCTC
TTTACTCTCGGGTATCGGAGTTGGACTGGAATATTCACATTTAATATCGTGGTTATCAGGAGAGGATTCAGGGAGAATCTTAGACTGCTGAGATAGCTCT
TTACTCTCAGGTATTTGCGGTGGACTAGGGCATTCAGGTTCAATATCTTGGTTATCAGGAGAAGATTCAGGGAGAGCCTTAGAATGCGGAGATAGCTCTA
TACTCTCCGGTATCGGAGGTGGACTAGGATATTCATGTCCATTATCTTGGTTATCAGGAGAAGATTCAAGGATAGTCCTTGACTGTGGGGATATCTCTTT
ACTCCCAGATATTGGAGGTGGACTACGATATTCATGTTCAGCATCTTGGTTATCAGGAGAAGATTCAGGGAGAATCTTAGACTGTGGAGACTGATTAACT
GACGTGTTTGATATATCAGCTTCAAGTGTTTTTTGTTGATTCATGTTCTCCTCCATCTTGCATGTATCAGAAGCAGAC