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Detailed information on CNT30575899


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DVU4|C3H20_ORYSJ, E-value = 5e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521915Oryza barthiiSetaria italica30.585.1184.05163forward
CNT30361544Oryza barthiiSorghum bicolor27.9515.783.89149forward

Expression of CNT30575899

Peptides detected in this lncRNA

>peptide 1 (38 aa)
RILDCRDSSLLSGIGVGLEYSHLISWLSGEDSGRILDC*

Sequence

>CNT30575899
GGAGAATCTTAGACTGCAGAGATAGCTCTTTACTCTCGGGTATCGGAGTTGGACTGGAATATTCACATTTAATATCGTGGTTATCAGGAGAGGATTCAGG
GAGAATCTTAGACTGCTGAGATAGCTCTTTACTCTCAGGTATTTGCGGTGGACTAGGGCATTCAGGTTCAATATCTTGTTTACCAGGAGATGATTCAGGG
AGAATCTTAGACTGCCGAGATAGCTCTTTACTCTCGGGTATTTGAGGTGGACTAGAGCATTCAGGTTCAATATCTTGGTTATCAGGAGAAGATTCAGGGA
GAGCCTTAGAATGCGGAGATAGCTCTATACTCTCCGGTATCGGAGGTGGACTACGATATTCATGTTCAGCATCTTGGTTATCAGGAGAAGATTCAGGGAG
AATCTTAGACTCTGGAGACTGATTAACTGACGTGTTTGATATATCAGCTTCAAGTGTTTTTTGTTGATTCATGTTCTCCTCCATCTTGCATGTATCAGAA
GCAGACGCAGAAGGAGCTGACTGTGGACTGCAG