Detailed information on CNT30672658


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 8e-94

BLAST vs NONCODE:
NONTPRT001916, E-value = 3e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521359Setaria viridisSetaria italica66.7794.2398.23621forward
CNT30368062Setaria viridisSorghum bicolor67.7457.3292.54630forward

Expression of CNT30672658

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MRSTDDKATRWVKVEDGLLVKPDICRHETDVAASVPDNLLVVDVGLGGDLTKDHDHVSLGAGLASNLAVGVLSKASIKHSI*

>peptide 2 (51 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETWSQSLSGCPSFTDSEVKRKVW*

>peptide 3 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 4 (36 aa)
MTKRPDGLRWKMVFSSSPTSADTKPMLRQVSLTIFS*

>peptide 5 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

Sequence

>CNT30672658
CAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATA
AGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTC
CCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCC
TTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAA
GGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGGAGAAAGCACCACCACCGTG
GGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGG
TGGAAGATGGTCTTCTCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCAAGTGTCCCTGACAATCTTCTCGTAGTCGACGTTGGCCTTGG
TGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCGGGGTCCTCAGCAAGGCAAGCATCAAGCACAGC
ATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCCCTCATTCACGGACTCCGAGGTGAAGAGGAAGGTATGGTAACAAGTTGGGGAGTGCTCGTCTCAG
ATCCGACCCGGCCGCAGCGCACGCCGAGCT