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Detailed information on CNT3038653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36450|NDUS2_NICSY, E-value = 6e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Cucumis meloSetaria viridis100.524.5192.79998forward
CNT30549796Cucumis meloIpomoea triloba12.9932.0994.57129reverse complement
CNT30405732Cucumis meloBeta vulgaris24.0719.3191.21239forward
CNT30201967Cucumis meloPisum sativum20.1410097.5200forward
CNT30491147Cucumis meloOlea europaea9.1623.6489.0191reverse complement
CNT30554303Cucumis meloOryza glaberrima20.8594.9593.72207forward
CNT3079268Cucumis meloBrassica juncea27.2910097.42271forward
CNT30679330Cucumis meloTriticum urartu47.1310097.22468forward
CNT30481303Cucumis meloChara braunii42.770.5581.37424forward
CNT30104344Cucumis meloOryza rufipogon7143.6595.46705forward
CNT30114308Cucumis meloFicus carica22.3613.0494.59222forward

Expression of CNT3038653

Peptides detected in this lncRNA

>peptide 1 (75 aa)
TYADFGGPCSTPVNLCGGDVPRGQRRIRSRSVGPRPFSGGWPAPPRTVIFDWAYTHSLTDAVPPQLTLAPGLLLF*

>peptide 2 (67 aa)
MSVFLGHRRNIDRVDDGTKNSLSYSFFVHVHLHHIHKCSLNRAIRSPITRLSHLSYPRPCYSMRLEKS

>peptide 3 (45 aa)
NLCRFWRTVLHPGELMRWRRTQRPEANPFTVRRTKTILRWVARPA*

Sequence

>CNT3038653
AACCTATGCCGATTTTGGCGGACCGTGCTCCACCCCGGTGAACTTATGCGGTGGAGACGTACCCAGAGGCCAGAGGCGAATCCGTTCACGGTCCGTAGGA
CCAAGACCATTCTCAGGTGGGTGGCCCGCCCCGCCTAGAACAGTCATCTTTGACTGGGCTTACACACATTCGCTCACTGACGCTGTCCCCCCTCAGCTTA
CCCTAGCCCCGGGCCTTTTGCTCTTCTAACGTCAGCTCCAAGGCTTCACACCAAGTCTTCACTGACATAATATGCATGCTTAAGTAGGGTCAGGCAGAAC
CCTTGTTGCCTGATGGGAACTTCCCCCATATTGCTATCAATGTCTTCATGTCGCACGACCTCTTAACATTACACCACTGAATCCCCAATCCTTTGCTTGC
TGTGCAGTGACAGTACCAATATCCACTAATCGTTGTTTCCAGATACGGTTGCCGGTTGACATCTCTTCTAATTCGTCGATACGAGAAGCAAATTGTTGTG
TGAAGGAATCAATATCTCGACATAAGCCAAGAGGCAGATCTTGTGCCACTCCACCTGGTCGTATGAAACTGGCATGCATCCTGGCTCCCGAGACTCTTTC
ATAGAATTCAAATAATTTCTCCCGCTCCTCAAAAGCCCACAGGAACGGAGTTGATGCTCCCACATCCATAGCATGAGTAGTTAAAGCAAGTGAATGATTT
GAAATTCGAGTGATTTCACGGAATAAGACTCGTATATATTGAGCTCGTAATGGTACCTCGCAATTCAAAAGTCTCTCTACAGCTGAAGAATGAGCGTGTT
CTTGGGCCATCGTAGAAACATAGATAGGGTCGACGACGGAACGAAGAACTCACTTTCCTACAGCTTTTTCGTACACGTTCACTTGCATCACATACACAAG
TGCTCTCTGAACCGTGCAATAAGGTCACCCATAACACGGCTCTCCCACTTAAGTTACCCCAGGCCATGCTATTCAATGAGATTGGAAAAATCA