Detailed information on CNT30481303


BLAST search results

BLAST vs Swiss-Prot:
sp|P93306|NDUS2_ARATH, E-value = 2e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Chara brauniiSetaria viridis67.399.9581.23405forward
CNT30201967Chara brauniiPisum sativum31.619583.68190forward
CNT30554303Chara brauniiOryza glaberrima22.862.8483.21137forward
CNT3079268Chara brauniiBrassica juncea38.685.6184.48232forward
CNT30679330Chara brauniiTriticum urartu67.3986.5481.48405forward
CNT3038653Chara brauniiCucumis melo70.5542.781.37424forward
CNT30104344Chara brauniiOryza rufipogon67.3925.0881.73405forward

Expression of CNT30481303

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSRMYLNVQTDYWGKIPWTSVESFVFRFQTRIYKAL

>peptide 2 (68 aa)
LNITPLNPQSIACCAVTVPISTSRCFQIRLFVNISSTSSIREANCCENRKRSSLKPKGKSCATXPGRI*

Sequence

>CNT30481303
TCTTAACATTACACCACTAAATCCCCAATCCATAGCCTGTTGTGCAGTAACAGTACCAATATCTACAAGTCGTTGTTTCCAAATACGATTGTTTGTTAAC
ATTTCTTCTACTTCGTCTATACGAGAAGCAAATTGCTGTGAAAATAGAAAAAGATCTTCGCTTAAACCCAAGGGTAAATCTTGTGCAACTCYACCTGGTC
GTATATAACTAGCATGCATTCTTGCTCCCGAAACTCTTTCATAAAATTCTAACAATTTTTCTCGTTTTTCAAAAGCCCAAAGAAAAGGGGTTAATGCTCC
TACATCCATAGCATGGGTGGTTAATGCAAGTAGATGATTTAAGATCCGGGTAATCTCACAAAATAACACTCGTATATATTGAGCTCGTAATGGTACTTCA
CAATTACAAAGTTTTTCTACAGCTAGAGGATTCTCTAATAAGCCCCACTTAATTGGAGACTTAGGATTTATGTAATACTTGTGAATTGAAATATGAGTAG
AATGTATTTAAACGTTCAAACGGATTACTGGGGCAAAATTCCTTGGACTTCAGTCGAGAGTTTTGTCTTCAGATTCCAGACCAGGATTTACAAGGCCTTG
C