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Detailed information on CNT30104344


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36450|NDUS2_NICSY, E-value = 1e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Oryza rufipogonSetaria viridis100.539.8797.411623forward
CNT30619472Oryza rufipogonSesamum indicum16.8442.592.65272reverse complement
CNT30201967Oryza rufipogonPisum sativum12.298.597.46197forward
CNT30491147Oryza rufipogonOlea europaea5.6323.6490.1191reverse complement
CNT30194250Oryza rufipogonSecale cereale68.4841.3597.291106forward
CNT30297416Oryza rufipogonTriticum aestivum66.1377.3496.721068forward
CNT30592657Oryza rufipogonMusa acuminata20.939.692.31338forward
CNT3079268Oryza rufipogonBrassica juncea16.5398.5296.63267forward
CNT30681493Oryza rufipogonTriticum urartu48.7947.197.46788forward
CNT30481303Oryza rufipogonChara braunii25.0867.3981.73405forward
CNT3038653Oryza rufipogonCucumis melo43.657195.46705forward
CNT30726873Oryza rufipogonLupinus angustifolius14.1273.0891.67228forward

Expression of CNT30104344

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSVFLGHRRNIDRVNYGTNNETLRQLFRTRSLASHTQVLSEPCNKVTHNTALPLELP*

>peptide 2 (57 aa)
MSGAPSLGGAFVEPNRRKSKRARPHPASNRRGLSSGSRLLAEMNGSERGSISGPGRR*

>peptide 3 (69 aa)
MRTSFPFALPTLRSHGYQSGGRVGSRYHEPSVPHIYQEASVVHRFHRMLLSLGKDRVSVQLCFGCFAME*

>peptide 4 (44 aa)
MLRMLRHGIDRLIPLLFRCTRFVSPTHKEGRGGKKAALASVRSII

Sequence

>CNT30104344
GCAGAACCGTTGTTGCCTGATGGGAACTTCCCCCATATTGCTATCAATGTCTTCATGTCGCACGACCTCTTAACATTACACCACTGAATCCCCAATCCTT
TGCTTGCTGTGCAGTGACAGTACCAATATCCACTAATCGTTGTTTCCAGATACGGTTGCCGGTTGACATCTCTTCTAATTCGTCGATACGAGAAGCAAAT
TGTTGTGTGGAGGAATCAATATCTCGACATAAGCCAAGAGGCAGATCTTGTGCCACTCCACCAGGTCGTATGAAACTGGCATGCATCCTGGCTCCCGGGA
CTCTTTCATAGAATTCCAACAATTTCTCCCGCTCCTCAAAAGCCCAAAGGAACGGAGTTGATGCTCCCACATCCATAGCATGAGTAGTTGAAGCAAGTGA
ATGATTTGAAATTCGAGTTATTTCACAGAATAACACTCGTATATATTGAGCTCGTAATGGTACCTCACAATTCAAAAGTCTCTCTACGGCTGAAGAATGA
GCGTGTTCTTGGGCCATCGTAGAAACATAGATAGGGTCAACTACGGAACGAACAACGAAACTTTACGACAGCTTTTTCGTACACGTTCACTTGCATCACA
TACACAAGTGCTCTCTGAACCGTGCAATAAGGTCACCCATAACACGGCTCTCCCACTGGAGTTACCTTAGCCCCGGGCCATGCTATTCCATGATATTGGA
AAAATGGCAGCCTAACTACTTATTATCATCGTCTTTAAAGCTGGGCGCCTTTTGAATATGAGTGGGGCTCCTAGTCTAGGCGGCGCCTTCGTGGAGCCAA
ACCGAAGGAAGAGCAAAAGGGCGAGGCCACACCCGGCTTCGAATAGGAGGGGGCTTAGCTCTGGATCCCGCCTGCTTGCAGAAATGAATGGATCAGAAAG
GGGTTCTATTTCCGGGCCGGGCAGGAGGTGAAGGCCAGAAGAAGAAGAGAAGTGCGCCTTCCCGGTAAGGAAGAGGATAAAAAGGTGCTGTCATCTATCT
CGACCTGTTTCCCGAGGCGTTGGAAATGAAGACCGGCTCGGAGAATCACTGGCGTGCTTTCTCCCCCCCATCGTTTCGCCAACAAAGAAGTCATCCTTGA
CTTGACGATTGACCATTCCATCCCTACCGAGCCGCCTCTTCGAAGTATTTACCTCTGCCTTTCTTTTTTTAGAACATACCCTTCAAATCAAAAAGCAAAA
ATCAAGAAAAGTTCCTCGTCTGTGATTTAATCGGCCCTAAGGGAGTTTACTCGACCCATTCTCCAGTCTCCCGCACTGCTCAAGTGTGCGACTCCGTATG
AGGACCTCCTTCCCTTTTGCTCTGCCCACTCTCCGTTCACACGGTTATCAAAGCGGAGGAAGGGTGGGCAGCAGGTACCACGAGCCCTCTGTCCCACACA
TCTATCAAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCAT
GGAATAGATCGACTCATTCCCCTTCTTTTCCGGTGCACTCGCTTTGTATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCTGCCCTAGCCTCTG
TCCGGTCGATCATTC