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Detailed information on CNT30384070


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 3e-33

BLAST vs NONCODE:
NONTAET008263, E-value = 4e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194413Triticum turgidumSecale cereale20.9228.1893.29164reverse complement
CNT30286102Triticum turgidumTriticum aestivum54.97100.4796.06431forward
CNT30220713Triticum turgidumHordeum vulgare37.1259.7591.41291forward
CNT30438383Triticum turgidumAegilops tauschii21.171.8493.98166reverse complement
CNT30656858Triticum turgidumTriticum dicoccoides98.9899.2398.07776forward
CNT30130675Triticum turgidumLolium perenne42.8648.3586.61336forward
CNT30679464Triticum turgidumTriticum urartu25.8929.9495.57203forward
CNT30604140Triticum turgidumOryza punctata16.7120.5383.21131forward
CNT30556972Triticum turgidumPanicum hallii16.3329.2281.25128forward

Expression of CNT30384070

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLHSNSIQSRLHTGGYHSDHPHIIPLSTTSQTRHYNEILTPNSYYR*

>peptide 2 (38 aa)
SIHTRIKTVMNLQMVLHVTLIQSITHSGSCRTNYSLRS*

>peptide 3 (49 aa)
VNTHSHKNSYEFTDGASCNFDSKHYTQWFMQNKLLPPFINTCLSRHFNR*

>peptide 4 (48 aa)
MGCISGAVAGAVSAGGLAKTLAMRSVGTSGRRFRAAQASAALRSATGS*

Sequence

>CNT30384070
AGTCAATACACACTCGCATAAAAACAGTTATGAATTTACAGATGGTGCTTCATGTAACTTTGATTCAAAGCATTACACACAGTGGTTCATGCAGAACAAA
CTACTCCCTCCGTTCATAAATACTTGTCTTTCTAGGCATTTCAACAGGTGACTACATACGGAGCAAAATGAGTAAATCTACACTCTAAAATATGTCTACA
TACATCCGTATGTAGTAGTCATTTGAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAAAACGCAAAGCAGGTGATGCTGCACAGCAACAGCA
TTCAGAGTCGCCTCCACACAGGCGGATACCACAGTGACCATCCACACATAATACCACTGTCCACCACAAGCCAAACAAGACACTACAACGAGATACTGAC
TCCTAACAGCTATTATAGGTAACATAACTCCGGGTAGCTCTTATTGTTACTGCGTCGGGATGGGCTGCATCTCAGGAGCTGTGGCAGGCGCAGTGTCGGC
GGGCGGGTTGGCGAAAACCCTTGCAATGCGCTCAGTTGGGACGAGCGGGAGGCGGTTCAGGGCGGCCCAGGCTTCGGCAGCCTTGCGCTCCGCCACAGGC
TCATAGCGGGTATACAAGTCACGGGCCTTAGGCTCAGCACGAGCAATGGCCGACTTGGCCAGTCCAGTTGCTGTGCCCATTATGCCTGTCTTCTGCACCT
CAGCTGCTGCAGAGCGGGCATAGGTCGGCACCTCCTTCACGACTGGTGGGACACGGCGGTCCAGCTCCTGGACAGACTCGTCAA