Detailed information on CNT30604140


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 9e-31

BLAST vs NONCODE:
NONORUT004900, E-value = 1e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286102Oryza punctataTriticum aestivum20.5330.5483.21131forward
CNT30384070Oryza punctataTriticum turgidum20.5316.7183.21131forward
CNT30656858Oryza punctataTriticum dicoccoides20.5316.7583.97131forward
CNT30130675Oryza punctataLolium perenne20.5318.8583.21131forward
CNT30556972Oryza punctataPanicum hallii17.425.3483.78111forward

Expression of CNT30604140

Peptides detected in this lncRNA

>peptide 1 (47 aa)
RGDKLWLSQLCCTYQSQIFLGNKPMDDNFLLTLPIHKPNSPFIRNVF*

>peptide 2 (89 aa)
MHVCGGLLRRDGLHLRRRRGGVSERVAEHPGESLGGDEREAVQRRPCLRRLALRHGLVPGVQVPRLGLGAGDRRLGEPRRRADEPRLPDL

>peptide 3 (30 aa)
EETNYGLVNCVVHTKAKYFLATNQWMTIFF*

>peptide 4 (43 aa)
MPPPPCAPPRARTGCTGPSPWARRGRSPTWRAPSPCRRAPPAGP

Sequence

>CNT30604140
CAGAGGAGACAAATTATGGCTTAGTCAATTGTGTTGTACATACCAAAGCCAAATATTTCTTGGCAACAAACCAATGGATGACAATTTTCTTTTGACATTG
CCAATTCACAAACCAAACAGTCCCTTCATCAGAAACGTTTTCTGATCGAAGATCTTGCAAATTACCAAACTTCAACCTGTTCTTTTGATCGAATCATTAT
CTAACTCGATCACTCGAACTATACCAAATACACATATGGTTGTTCACATAATACAAGTATTACACGAGCAATTTGTAGCAACTAACAAGACCGATCACAC
CATTACTAATAGCACAAGATAATTCATAATTCATCCAAGCTAAGCTCTAGTAATATTTTGGCCACACGATGCATGTGTGTGGTGGTTTACTGCGACGGGA
TGGGCTGCATCTCCGGCGCCGGCGAGGCGGAGTCAGCGAGAGGGTAGCCGAACACCCTGGAGAGTCGCTCGGTGGGGACGAGCGGGAGGCGGTTCAGCGC
CGCCCATGCCTCCGCCGCCTTGCGCTCCGCCACGGGCTCGTACCGGGTGTACAGGTCCCTCGCCTTGGGCTCGGCGCGGGCGATCGCCGACTTGGCGAGC
CCCGTCGCCGTGCCGACGAGCCCCGCCTGCCGGACCTC