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Detailed information on CNT30679464


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 6e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286021Triticum urartuTriticum aestivum38.217.7594.21259forward
CNT30220713Triticum urartuHordeum vulgare58.2681.1189.87395forward
CNT30384070Triticum urartuTriticum turgidum29.9425.8995.57203forward
CNT30656858Triticum urartuTriticum dicoccoides29.9425.9696.06203forward
CNT30130675Triticum urartuLolium perenne29.7929.0688.61202forward
CNT30556972Triticum urartuPanicum hallii14.0121.6983.1695forward

Expression of CNT30679464

Peptides detected in this lncRNA

>peptide 1 (94 aa)
LVIANKTVPTVDTHSHKNSNEFTDGVSCNFDSKHYTQWFMKNKLKHKAGVAAQQQHSNPLNRGGYHSDHPHIVPLSTTSQTRHYIEIPTPTAIR*

Sequence

>CNT30679464
TCTTGTAATAGCAAATAAAACAGTGCCGACAGTCGATACACACTCGCATAAAAACAGTAATGAATTTACAGATGGTGTTTCCTGTAACTTTGATTCAAAG
CATTACACACAGTGGTTCATGAAGAACAAACTAAAACACAAAGCAGGTGTTGCTGCACAGCAACAGCATTCGAATCCCCTCAACAGAGGCGGATACCACA
GTGACCATCCACATATAGTACCACTGTCCACCACAAGCCAGACAAGACACTACATCGAGATACCGACTCCTACAGCTATTAGGTAATAATAAAACTCCGG
GTAGCTCTTATTGTTACTGCGTCGGGATGGGCTGCATCTCAGGAGCTGTGGCAGGCGCAGGGTCAGCTGCCGGGTAGGCAAAAACCCTTGCGATGCGCTC
CGTTGGGACAAGCGGGAGGTAGGTAGCGACGGAGTTGCCACGCTTAGCACCATCAAGCACGGCAGAGTTGTACTTGGCTTCGGCAGCCTTGCGCTCCGCC
ACAGGCTCGTAGCGGGTATACAAGTCGCGGGCCTTTGGCTCAGCGCGAGCAATGGCCGACTTGGCCAGTCCAGTTGCTGTGCCCATTATGCCTGTCTTCT
GCACCTCAGCTGCTGCAGAGCGGGCATAGGTTGGCACCTCCTTCACGACCGGTGGGACACGACGATCAAGCTCCTGGA