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Detailed information on CNT30656858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 7e-34

BLAST vs NONCODE:
NONTAET008264, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194413Triticum dicoccoidesSecale cereale18.825.2691.84147reverse complement
CNT30286102Triticum dicoccoidesTriticum aestivum55.12100.4796.06431forward
CNT30220713Triticum dicoccoidesHordeum vulgare37.2159.7591.75291forward
CNT30384070Triticum dicoccoidesTriticum turgidum99.2398.9898.07776forward
CNT30130675Triticum dicoccoidesLolium perenne43.7349.2186.55342forward
CNT30679464Triticum dicoccoidesTriticum urartu25.9629.9496.06203forward
CNT30604140Triticum dicoccoidesOryza punctata16.7520.5383.97131forward

Expression of CNT30656858

Peptides detected in this lncRNA

>peptide 1 (41 aa)
KNSYEFTDGASCNFDSKHYTQWFMQNKLLTPFINTCQYLSF*

>peptide 2 (32 aa)
KTVMNLQMVLHVTLIQSITHSGSCRTNYSLRS*

>peptide 3 (48 aa)
MGCISGAVAGAVSAAGLAKTLAMRSVGTSGRRFRAAQASAALRSATGS*

>peptide 4 (46 aa)
MLHSNSIQSRLHTGGYHSDHPHIIPLSTTSQTRHYNEILTPNSYYR*

Sequence

>CNT30656858
TAAAAACAGTTATGAATTTACAGATGGTGCTTCATGTAACTTTGATTCAAAGCATTACACACAGTGGTTCATGCAGAACAAACTACTCACTCCGTTCATA
AATACTTGTCAATACTTGTCTTTCTAGGCATTTCAACAGGTGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATTCG
TATGTAGTAGTCATTTGAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAAAACGCAAAGCAGGTGATGCTGCACAGCAACAGCATTCAGAGT
CGCCTCCACACAGGCGGATACCACAGTGACCATCCACACATAATACCACTGTCCACCACAAGCCAAACAAGACACTACAACGAGATACTGACTCCTAACA
GCTATTATAGGTAACATAACTCCGGGTAGCTCTTATTGTTACTGCGTCGGGATGGGCTGCATCTCAGGAGCTGTGGCAGGCGCAGTGTCGGCGGCCGGGT
TGGCGAAAACCCTTGCAATGCGCTCAGTTGGGACGAGCGGGAGGCGGTTCAGGGCGGCCCAGGCTTCGGCAGCCTTGCGCTCCGCCACAGGCTCATAGCG
GGTATACAAGTCACGGGCCTTAGGCTCAGCGCGAGCAATGGCCGACTTGGCCAGTCCAGTTGCTGTGCCCATTATGCCTGTCTTCTGCACCTCAGCTGCT
GCAGAGCGGGCATAGGTCGGCACCTCCTTCACGACTGGTGGGACACGGCGGTCCAGCTCCTGGACAGACTCGTCAACCTGCA