« Back to Manihot esculenta search


Detailed information on CNT30381863


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 4e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698491Manihot esculentaQuercus lobata64.8462.5983.22614forward
CNT30630785Manihot esculentaVigna unguiculata71.3879.2585.21676forward
CNT30201346Manihot esculentaPisum sativum71.1765.3183.68674forward
CNT30169896Manihot esculentaPistacia vera72.1242.585.36683forward
CNT30568721Manihot esculentaActinidia chinensis73.2851.0382.71694forward
CNT3089456Manihot esculentaVigna radiata71.1745.385.01674forward
CNT30425713Manihot esculentaPapaver somniferum68.9563.8983.15653forward

Expression of CNT30381863

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MKSRLLLDVIVSQGTAVFKLLAGEDQPLLVGGNSLLILNLGLDIIDCIGALDLESYGLACEGLDEDLHIGD*

>peptide 2 (46 aa)
MLETKHPDTQIKAANFNSAIATAKTEHKVESGLLLDVIIREGPPIL*

>peptide 3 (42 aa)
NMIEVKQHLLIINGLYLLIELIRHIILQYYLILLGKQESSEI*

>peptide 4 (34 aa)
MVLPVRVLTKICILETDQRKRKGFPVAVEEDRVSI

Sequence

>CNT30381863
AAACATGATTGAAGTCAAACAACATTTGCTTATAATAAACGGACTTTATTTATTAATAGAACTCATACGACATATCATACTACAATACTACTTAATATTA
TTAGGAAAGCAGGAAAGTTCAGAAATTTGATACGAAATGCTAGAAACCAAACACCCAGACACACAGATCAAAGCAGCAAACTTTAATTCAGCAATCGCCA
CCGCGAAGACGGAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAATCCGCGAGGGTCCTCCCATCCTCTAGCTGCTTTCCTGCAAAGATAAGCC
TTTGCTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCAGAACTCTCAACCTCCAGAGTGATAGTCTTCCCAGT
CAAGGTCTTCACAAATATCTGCATACCCCCACGAAGCCTCAGAACCAGATGAAGGGTTGACTCCTTTTGGATGTTATAATCAGCGAGGGTCCTTCCATCC
TCCAATTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTGTCAATTGTGTCAGAGCTCT
CGACCTCAAGAGTTATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATGCCACCCCGAAGACGGAGGACAAGATGAAGAGTAGACTCCTTCTGGAT
GTTATAGTCAGCCAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGGTCGGGGGGAATTCCCTCCTTATCTTGAATCTTGGCC
TTGACATTATCGATTGTATCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATATTGGAGACTGATCAACGGA
AAAGAAAAGGCTTTCCGGTAGCTGTTGAAGAAGATAGGGTTTCGATT