Detailed information on CNT30425713


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 2e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381863Papaver somniferumManihot esculenta63.8968.9583.15653forward
CNT30712003Papaver somniferumGlycine max64.2980.7182.19657forward
CNT30238974Papaver somniferumBrassica oleracea65.6659.3884.05671forward
CNT3026462Papaver somniferumPopulus trichocarpa66.6375.1783.7681forward

Expression of CNT30425713

Peptides detected in this lncRNA

>peptide 1 (34 aa)
TFYNMLPTVRTQNSSANIEILSNTELIHPCYIED*

>peptide 2 (48 aa)
MEGRLLLDVVVSKGATIFQLLSGKDQPLLIWRNTLLILDLSLNIIDGV*

>peptide 3 (52 aa)
NILQYAPNSANSKQFCKHRNTEQHRVNTPLLYRRLNRKYHKLKTSLLKQQFI*

>peptide 4 (40 aa)
MVSELSTSRVMVFPVKVLTKICIPPLRRRTRWRVDSFWML*

>peptide 5 (30 aa)
MVFPVKVLTKICIPPRRRSTKWRVDSFWML*

>peptide 6 (32 aa)
MEHKGNPKRENENINIKFVQLREHKRYQIIKP*

Sequence

>CNT30425713
AACATTTTACAATATGCTCCCAACAGTGCGAACTCAAAACAGTTCTGCAAACATAGAAATACTGAGCAACACAGAGTTAATACACCCCTGCTATATAGAA
GACTAAATAGAAAATACCATAAGCTCAAAACCAGTTTACTAAAGCAACAATTTATTTAATAACAAAAGAACCACAGACGATGATAACACTGCACTTGACT
GTTGATGCAGTGAATGGAACATAAGGGAAATCCTAAAAGAGAGAACGAAAACATTAACATAAAGTTCGTCCAACTAAGGGAACACAAACGATACCAAATC
ATCAAGCCATAGCTGAAACACCATCAACAGATACTCTAGTTACCACCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAG
CAAGAGTACGACCATCCTCCAATTGCTTTCCTGCGAAAATCAAACGTTGCTGGTCTGGAGGGATCCCTTCCTTATCTTGGATCTTGGCCTTAACATTGTC
AATAGTGTCCGAGCTCTCCACCTCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCATACCACCACGTAGACGAAGCACCAAATGGAGG
GTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATACCCTCCT
TATCTTGGATCTTAGCCTTAACATTATCGATGGTGTCTGAGCTCTCCACCTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACAAAGATTTGCATACC
ACCTCTAAGACGAAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTATAGTCAGCTAGAGTTCTTCCATCTTCCAACTGCTTACCAGCGAAGATCAAA
CGTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGGGTAATGGTCTTACCAG
TAAGTGTTTTCACAAAGATCTG