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Detailed information on CNT3089456


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-156

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-128

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275114Vigna radiataChenopodium quinoa45.3696.4384.89675forward
CNT30381863Vigna radiataManihot esculenta45.371.1785.01674forward
CNT30525954Vigna radiataPhaseolus vulgaris53.4372.4793.58795forward
CNT30630785Vigna radiataVigna unguiculata56.3898.3695.35839forward
CNT30510145Vigna radiataSolanum lycopersicum45.6347.6884.68679forward
CNT30174651Vigna radiataVigna angularis70.976.7390.91055forward
CNT30111740Vigna radiataFicus carica46.359.2983.89689forward
CNT30726539Vigna radiataLupinus angustifolius45.4371.0885.65676forward

Expression of CNT3089456

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRRCWSGGIPSLSWILAFTLSIVSELSTSRVMVFPVRVLTKICICRVKNHKRITMMQLNRSD*

>peptide 2 (31 aa)
MVSELSTSRVMVLPVRVFTKICMPPRRRRTK*

Sequence

>CNT3089456
AGGATCCATCCATTTACGCGAGTAAACATTTCAAAACAACAGTTAATCATTCCATGAGGCATCATAAACTAATAGCATAATTAGTTATTATATATCTATA
AAGTTGATTAATAACAGCAGTAAATCATTCCATCAGGCAAAACAAACTAATAACATAGTAGCATATTATATATCTAAAGTTTCATTATAACAAAGGAACA
ATACAGTCCAACACAAACCAAATTTATTTAAGGGTCAATAAAGACCCAATCCACAGTCCGATTTTGAAGATGTCTTGAAAGCAGTAAAAAACAGAGATCA
GCACAGTCTAAAAGCCCCCTCGTAGACGGAGAACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTCCCATCCTCAAGCTGCTT
CCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCCGAACTCTCCACCTCAAGG
GTAATAGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATACCACCACGAAGGCGCAAAACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCCG
CGAGGGTCCTTCCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTC
GATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCATGCCACCTCGGAGACGGAGAACTAAGTGAAGG
GTTGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCTAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCT
TATCCTGGATCTTGGCCTTCACGTTGTCAATAGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGCATCTG
CAGAGTTAAAAACCACAAACGAATCACAATGATGCAATTAAACAGATCCGACTGAATCAAGCAAATTTCAAGAACAGATCTGATGAATTTCATGGAAAAA
AGAAACCGATAATTTTGGGTCAGGGGATAAACCACACAAGGCAATGATTAATGGATCTGAAAATTTTCTAAAATAAAAAAACTGTTAACGGATCTGAAAA
ATTTCTTCAAAAAAATAATTAGATCTAATAAAGGGCTACAGAGAAAAATTCAAAACGTTATTGTAAAAGAGAAAGAAAATATTGATGGATCTGTACAACC
CCTATCTTAAACACAACAACCTAATCGAAAACATGATAATTCACGGAACTACTGAATAACAAGAACGAAGAACTGGACGAACCTTGAGGGGAGAGGTAGG
GAACTGCGCAAAGAGAATGAGCTAGTTTGTTTAGAATTGAACTGTGAAGAAAGACGGAGGGTTTGGGCCTTTTTATAGCTAAAGGGGT