Detailed information on CNT30367417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Sorghum bicolorOryza sativa31.925.7293.2689forward
CNT30677251Sorghum bicolorSetaria viridis59.8626.6391.62167forward
CNT30523711Sorghum bicolorSetaria italica43.3729.9581.82121forward
CNT30529038Sorghum bicolorEucalyptus grandis44.0933.5185.37123forward
CNT30282518Sorghum bicolorChenopodium quinoa25.453.0385.9271forward
CNT3045147Sorghum bicolorPrunus dulcis22.2214.7387.162reverse complement
CNT30295690Sorghum bicolorTriticum aestivum65.5931.1890.16183forward
CNT30223563Sorghum bicolorHordeum vulgare49.8228.3189.21139forward
CNT30392240Sorghum bicolorTriticum turgidum63.4422.1889.27177forward
CNT30555309Sorghum bicolorOryza glaberrima31.917.6993.2689forward
CNT30439260Sorghum bicolorAegilops tauschii25.4511.8191.5571forward
CNT30664196Sorghum bicolorTriticum dicoccoides63.4424.3889.83177forward
CNT30135612Sorghum bicolorLolium perenne27.2412.0393.4276forward
CNT30231657Sorghum bicolorAnanas comosus34.779.9287.6397forward
CNT3068314Sorghum bicolorLeersia perrieri27.968.5592.3178forward
CNT30653454Sorghum bicolorRosa chinensis29.0313.1185.1981forward
CNT30683568Sorghum bicolorTriticum urartu50.1828.5188.57140forward
CNT30338280Sorghum bicolorEragrostis tef58.7830.690.24164forward
CNT30371376Sorghum bicolorOryza glumipatula67.7438.8190.48189forward
CNT30118988Sorghum bicolorCitrus clementina43.7325.2183.61122forward
CNT30104073Sorghum bicolorOryza rufipogon53.4118.4689.26149forward
CNT30578155Sorghum bicolorOryza barthii67.7417.1890.48189forward
CNT30117901Sorghum bicolorOryza nivara31.914.9393.2689forward

Expression of CNT30367417

Peptides detected in this lncRNA

>peptide 1 (91 aa)
TYTYMWPYVHAHVRQMKSAEEVVLLLAGGLLGLLVVLLLLVVLVEGEAAGSHGRRRRDLLLDLVPVRVLRVLLRLVLLVLCSSSFLWWNRWW

>peptide 2 (91 aa)
YIYIHVAVRARTRTSNEISRRSGASSRRRPPRPPCGPSSSRGARGRRSRRIPRPPPPRSPPRSCAGARAPGPSSPRASRTLLLVLLVVEQVV

Sequence

>CNT30367417
ATACATATACATACATGTGGCCGTACGTGCACGCACACGTACGTCAAATGAAATCAGCCGAAGAAGTGGTGCTTCTTCTCGCCGGCGGCCTCCTCGGCCT
CCTTGTGGTCCTTCTTCTTCTCGTGGTGCTCGTGGAAGGCGAAGCCGCCGGATCCCACGGCCGCCGCCGCCGCGATCTCCTCCTCGATCTTGTGCCGGTG
CGCGTGCTCCGGGTCCTTCTTCGCCTCGTGCTTCTCGTACTCTGCTCCTCGTCCTTCTTGTGGTGGAACAGGTGGTGGT