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Detailed information on CNT30223563


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Hordeum vulgareOryza sativa16.923.9990.3683forward
CNT30677251Hordeum vulgareSetaria viridis26.8821.0590.15132forward
CNT30534473Hordeum vulgareEucalyptus grandis16.532.5385.1981forward
CNT30184873Hordeum vulgareSecale cereale42.3649.1794.23208forward
CNT30295260Hordeum vulgareTriticum aestivum81.0655.8289.45398forward
CNT30392240Hordeum vulgareTriticum turgidum82.6950.8890.89406forward
CNT30439260Hordeum vulgareAegilops tauschii63.3451.7589.07311forward
CNT30664196Hordeum vulgareTriticum dicoccoides82.6955.9291.13406forward
CNT30463176Hordeum vulgareSaccharum spontaneum20.1617.7192.9399forward
CNT30683568Hordeum vulgareTriticum urartu81.0681.0690.2398forward
CNT30338280Hordeum vulgareEragrostis tef28.3125.9385.61139forward
CNT30367417Hordeum vulgareSorghum bicolor28.3149.8289.21139forward
CNT30371376Hordeum vulgareOryza glumipatula28.3128.5486.33139forward
CNT30104073Hordeum vulgareOryza rufipogon28.3117.2286.33139forward
CNT30578155Hordeum vulgareOryza barthii28.3112.6486.33139forward

Expression of CNT30223563

Peptides detected in this lncRNA

>peptide 1 (47 aa)
KKEKNVKLQIQGAGRIETHTPTRDKHRRMRCGSHCMNSNPAYSARGR*

Sequence

>CNT30223563
AAAGAAAGAAAAAAATGTGAAGTTACAAATACAGGGCGCCGGTAGAATTGAAACACACACACCGACACGCGACAAACACCGACGCATGAGGTGTGGGAGC
CACTGCATGAACAGCAACCCCGCTTATTCAGCACGCGGAAGATAGCACGCAGAGAAAATCACGCACAGGCGAGCACGAGACCGGGCCCACGTCCCAGCCT
CTCTCGCTTATGGAACACACGTAAGCACACGCACGCCGGCGGCCCGCGCGTCGGCGACGATCTAGCCGAAGTGGTGGTGCTTCTTCTCGCCGCTGGCCTC
CTTGGCCTCCTTGTGGTCCTGCTTCTTCTCGTGGTGCTCGTGGAAGACGAAGCCGCCGGCACCGACGGCCGCGGCGGCGGCCAGCTCCTCCTCGATCTTG
TGGTGGTGGTGCTTCTCCTCCGCCATGGCCGCCGGCTGATCGATTAACTAGCTTGTATGTGTGCGTGTATGTGACAGTGGGACAGCTTCTT