Detailed information on CNT30555309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Oryza glaberrimaOryza sativa67.297.6997.63338forward
CNT30677344Oryza glaberrimaSetaria viridis21.2725.3689.72107forward
CNT30349848Oryza glaberrimaEragrostis tef11.3320.9687.7257forward
CNT30367417Oryza glaberrimaSorghum bicolor17.6931.993.2689forward
CNT30371358Oryza glaberrimaOryza glumipatula65.6154.3797.58330forward
CNT30105156Oryza glaberrimaOryza longistaminata37.1834.7695.72187forward
CNT30104073Oryza glaberrimaOryza rufipogon81.7150.9397.81411forward
CNT30578155Oryza glaberrimaOryza barthii81.7137.36100411forward
CNT30117901Oryza glaberrimaOryza nivara10084.498.41503forward

Expression of CNT30555309

Peptides detected in this lncRNA

>peptide 1 (48 aa)
ESQGSIDIASLVQSTDKNTLIHDTERAMHTTYLDTQRARLQRKSSNTS*

>peptide 2 (83 aa)
MTRREPCTPLIWTHRGQGCRENQATQAELTAPPVSLSLVEAGDSCEKQQHHASRRRQIITHTNRRHGGRRRTARSSPPTTTWR*

>peptide 3 (45 aa)
MREISRRGGASSRRWTPRRSCGPSSSRGARGRRGGGASPPPWLIN*

Sequence

>CNT30555309
GAAAGTCAAGGTTCGATAGATATTGCTTCACTTGTACAAAGTACAGATAAAAATACATTGATACATGACACGGAGAGAGCCATGCACACCACTTATTTGG
ACACACAGAGGGCAAGGCTGCAGAGAAAATCAAGCAACACAAGCTGAACTCACGGCCCCACCTGTCAGCCTCTCACTGGTCGAGGCCGGAGACTCTTGTG
AAAAACAGCAACACCACGCAAGCAGAAGAAGACAAATTATTACACACACAAATCGACGACACGGCGGCCGGCGACGTACGGCGAGGTCGTCGCCGCCGAC
GACGACGTGGCGATGAGAGAGATCAGCCGAAGAGGTGGTGCTTCTTCTCGCCGGTGGACTCCTCGGCGCTCTTGTGGTCCTTCTTCTTCTCGTGGTGCTC
GTGGAAGGCGTGGTGGTGGTGCTTCTCCTCCGCCATGGCTAATTAATTAATTAAGCTAGCTAGAAGCTAGTGATGACAATTAGGAGAATGAGATGGAAGT
GAC