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Detailed information on CNT30677251


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528686Setaria viridisEucalyptus grandis18.0225.4584.07113forward
CNT30295690Setaria viridisTriticum aestivum27.1128.9691.18170forward
CNT30223563Setaria viridisHordeum vulgare21.0526.8890.15132forward
CNT30392240Setaria viridisTriticum turgidum28.7122.5691.11180forward
CNT30664196Setaria viridisTriticum dicoccoides28.7124.7991.67180forward
CNT30462157Setaria viridisSaccharum spontaneum29.0334.494.51182forward
CNT30683568Setaria viridisTriticum urartu21.2127.0989.47133forward
CNT30338280Setaria viridisEragrostis tef24.2428.3695.39152forward
CNT30367417Setaria viridisSorghum bicolor26.6359.8691.62167forward
CNT30371376Setaria viridisOryza glumipatula29.1937.5893.44183forward
CNT30104073Setaria viridisOryza rufipogon24.2418.8492.76152forward
CNT30578128Setaria viridisOryza barthii27.2711.7594.74171forward

Expression of CNT30677251

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MGRWCSSPAAGHQPKRWWCFFSPLASSASLWSFFFSWCSWKAYPPAPTAAVAAISSVILCLCACSGSFFASCCLCFTRRRTLRRRAAGPRPSCGG*

>peptide 2 (59 aa)
RQELDLGATHVAPGYSTQLYMQRKIKQVHMMSTSPHTAPPLSLSQASEGPERTYLYILQ*

>peptide 3 (29 aa)
DKSLTWEPHTSLLVIQRNYTCREKSSKYT*

Sequence

>CNT30677251
TAGACAAGAGCTTGACTTGGGAGCCACACACGTCGCTCCTGGTTATTCAACGCAATTATACATGCAGAGAAAAATCAAGCAAGTACACATGATGAGCACC
TCGCCGCACACGGCCCCACCTCTCAGTCTCTCACAAGCAAGCGAAGGTCCGGAAAGGACTTATTTGTACATACTGCAGTGACTCGTCAAATTAACACGTA
CGCGTGCACACAAGCAAGTAATGGGCAGGTGGTGCTCATCGCCGGCGGCCGGCCATCAGCCGAAGAGGTGGTGGTGCTTCTTCTCGCCGCTGGCCTCCTC
GGCTTCCTTGTGGTCCTTCTTCTTCTCGTGGTGCTCGTGGAAGGCGTATCCGCCGGCGCCGACGGCCGCCGTGGCGGCGATCTCCTCCGTGATCTTGTGC
CTGTGCGCGTGCTCCGGGTCCTTCTTCGCCTCGTGCTGCTTGTGCTTTACCCGCCGCCGTACTCTCCGCCGGCGGGCTGCTGGTCCTCGTCCTTCTTGTG
GTGGTTGAAGAAGTGGTGGTGCTTCTCCTCCGACATGGCTGCTGCTGTCAGCTGGTCAGCTAATGTGGCTGCTTCACTGGGAGTAGTACTCGTACACTTG
GCTAGCTCTTGCCTGTGAGTGACAATA