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Detailed information on CNT30104073


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Oryza rufipogonOryza sativa30.4871.1100246forward
CNT30677251Oryza rufipogonSetaria viridis18.8424.2492.76152forward
CNT30297383Oryza rufipogonTriticum aestivum22.4332.6784.53181forward
CNT30223563Oryza rufipogonHordeum vulgare17.2228.3186.33139forward
CNT30555309Oryza rufipogonOryza glaberrima50.9381.7197.81411forward
CNT30662523Oryza rufipogonTriticum dicoccoides22.4327.8584.53181forward
CNT30463176Oryza rufipogonSaccharum spontaneum16.9824.5191.97137forward
CNT30338280Oryza rufipogonEragrostis tef18.5927.9992150forward
CNT30367417Oryza rufipogonSorghum bicolor18.4653.4189.26149forward
CNT30371358Oryza rufipogonOryza glumipatula40.8954.37100330forward
CNT30105156Oryza rufipogonOryza longistaminata32.4748.795.42262forward
CNT30578146Oryza rufipogonOryza barthii63.8261.1697.67515forward
CNT30117901Oryza rufipogonOryza nivara58.3679.0399.79471forward

Expression of CNT30104073

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MQKKTNYYTHKSTTRRPATYGEVVAAAGDVVMRSISRRGGASSRRWTPRRSCGPSSSRGARGRRSRRRRPPPWPRSPP*

>peptide 2 (82 aa)
MTRREPCTPLIWTHRGQGCRENQATQAELTAPPVSLSLVEAGDSCEKQQHHACRRRQIITHTNRRHGGRRRTARSSPPPATL*

Sequence

>CNT30104073
TCGATATAATTTAACACACTAAAATCTACTCAACTTTAATGGTTTTTCAAATAGAATGGAGAAAGTCAAGGTTCGATAAATATTGCTTCACTTGTACAAA
GTACAGATAAAAATACATTGATACATGACACGGAGAGAGCCATGCACACCACTTATTTGGACACACAGAGGGCAAGGCTGCAGAGAAAATCAAGCAACAC
AAGCTGAACTCACGGCCCCACCTGTCAGCCTCTCACTGGTCGAGGCCGGAGACTCTTGTGAAAAACAGCAACACCACGCATGCAGAAGAAGACAAATTAT
TACACACACAAATCGACGACACGGCGGCCGGCGACGTACGGCGAGGTCGTCGCCGCCGCCGGCGACGTTGTGATGAGGTCGATCAGCCGAAGAGGTGGTG
CTTCTTCTCGCCGGTGGACTCCTCGGCGCTCTTGTGGTCCTTCTTCTTCTCGTGGTGCTCGTGGAAGGCGTAGCCGCCGGCGCCGACCGCCGCCGTGGCC
GCGATCTCCTCCGTGATCTTGTGCCTGTGCTGCTTGTGCTTGTGCTGCTTCTCCTCCTTCTTGTACCTCTCGTACTCGTCCTGGCCGCCGGCGACCACCT
CGGTGGTCACCGTCTCCGACGTGTAGACGCCCTCGCCGTAGGAGTCTACTCCGGTGGCCGGCTCGTCGTCCTTCTTGTGGTGGAACAGGTGGTGGTGGTG
CTTCTCCTCCGCCATGGCTAATTAATTAATTAAGCTAGCTAGAAGCTAGTGATGACAATTAGGAGAATGAGATGGAAGTGACAATAAGATGTGGCTTTGC
TTGCTTG