Detailed information on CNT30362246


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698284Sorghum bicolorQuercus lobata24.8647.989.78137forward
CNT30709121Sorghum bicolorGlycine max41.3856.8687.72228forward
CNT30564261Sorghum bicolorActinidia chinensis41.280.7888.11227forward
CNT30590647Sorghum bicolorMusa acuminata25.4144.8791.43140forward
CNT30450104Sorghum bicolorSaccharum spontaneum21.7828.7896.67120forward
CNT30218533Sorghum bicolorKalanchoe fedtschenkoi20.5121.7386.73113forward
CNT30483063Sorghum bicolorChara braunii20.6950.4486.84114forward

Expression of CNT30362246

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSMVMPLSRSALSLSSTQAYLKDLLFISAASFSNLSMTRLSMPPSL*

>peptide 2 (41 aa)
MYIIQPARNQEPWICRIIIISSWQPPCSTWWSQTSTGQCQW*

>peptide 3 (36 aa)
HGTPHRNIKHVTDKYYYNGRHIIMVGNHEHNRRHIL*

Sequence

>CNT30362246
CATGGCACGCCTCATAGAAACATCAAACATGTCACTGATAAATACTATTATAATGGTAGGCATATTATAATGGTAGGCAATCACGAACACAACCGTCGAC
ACATACTGTAAAGACACTGAACCATCAAATTGTTCTTTTGTAACTACTACTAGCACCACCCAACAAAATAGGGACACTTATTTGACATGTATATAATCCA
ACCAGCAAGAAACCAGGAACCATGGATATGCAGGATCATCATCATTTCTTCTTGGCAGCCGCCTTGTAGTACTTGGTGGTCTCAAACTTCCACAGGGCAA
TGTCAATGGTGATGCCCCTCTCGCGCTCGGCCTTGAGCTTGTCAAGCACCCAGGCGTACTTGAAGGACCTCTTGTTCATCTCGGCAGCCTCCTTCTCAAA
CCTCTCGATGACACGCTTGTCGATGCCTCCAAGCTTGTAGATGAGGTGGCCGGTGGTGGTGGACTTGCCGGAGTCAACATGACCAATGACCACAATGTTG
ATGTGAACCTTCTCCTTCCCCATGGCAACGGGACCAGCTGACTAGCTAGCT