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Detailed information on CNT30483063


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673182Chara brauniiSetaria viridis50.8824.7387.83115forward
CNT30520930Chara brauniiSetaria italica34.5128.5789.7478forward
CNT30727592Chara brauniiCorchorus capsularis50.448.6284.21114forward
CNT30195181Chara brauniiPisum sativum42.4820.2582.2996forward
CNT30709121Chara brauniiGlycine max36.7320.785.5483forward
CNT30160107Chara brauniiPistacia vera37.1718.7984.5284forward
CNT3093993Chara brauniiSolanum tuberosum36.7315.984.3483forward
CNT30288144Chara brauniiTriticum aestivum50.8831.0886.09115forward
CNT30386294Chara brauniiTriticum turgidum50.8831.2586.09115forward
CNT30564261Chara brauniiActinidia chinensis5040.2183.19113forward
CNT30590647Chara brauniiMusa acuminata50.8836.8688.7115forward
CNT30658093Chara brauniiTriticum dicoccoides50.8826.3286.09115forward
CNT30450104Chara brauniiSaccharum spontaneum41.1522.389.2593forward
CNT30608684Chara brauniiGossypium raimondii50.4427.0885.96114forward
CNT30218533Chara brauniiKalanchoe fedtschenkoi41.1517.8883.8793forward
CNT3067093Chara brauniiLeersia perrieri50.8825.7386.09115forward
CNT30646927Chara brauniiRosa chinensis50.4433.9384.21114forward
CNT30338600Chara brauniiEragrostis tef50.8823.9686.96115forward
CNT30362246Chara brauniiSorghum bicolor50.4420.6986.84114forward
CNT30704438Chara brauniiPrunus avium31.4229.4685.9271forward
CNT30645213Chara brauniiCannabis sativa41.1542.8690.3293forward
CNT30120727Chara brauniiCitrus clementina50.4420.7386.84114forward
CNT30101083Chara brauniiOryza rufipogon50.8821.5487.83115forward
CNT30585568Chara brauniiEchinochloa crusgalli29.6513.0688.0667forward
CNT30594327Chara brauniiEragrostis curvula50.8832.4985.22115forward

Expression of CNT30483063

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRWPVVVDLPESTWPMTTMLICDFSFPMSGGRSTQPQRRAADTAPHRQQTAHAADR*

>peptide 2 (32 aa)
HTLVNATQLVDEMARGRRLAGVDMADDHDVDM*

Sequence

>CNT30483063
CACACGCTTGTCAATGCCACCCAGCTTGTAGATGAGATGGCCCGTGGTCGTCGACTTGCCGGAGTCGACATGGCCGATGACCACGATGTTGATATGTGAC
TTCTCCTTCCCCATGTCCGGAGGAAGAAGCACGCAACCGCAGCGCCGCGCAGCGGACACCGCACCGCACAGACAACAAACGGCGCACGCCGCCGACCGAT
GAAGCGGTCTCACGATGAGATCTGCT