« Back to Saccharum spontaneum search


Detailed information on CNT30450104


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520930Saccharum spontaneumSetaria italica19.6630.0490.2482forward
CNT30727592Saccharum spontaneumCorchorus capsularis22.066.9691.392forward
CNT30195181Saccharum spontaneumPisum sativum22.319.6286.0293forward
CNT30709121Saccharum spontaneumGlycine max22.0622.9488.0492forward
CNT3093993Saccharum spontaneumSolanum tuberosum22.0617.6284.7892forward
CNT30288144Saccharum spontaneumTriticum aestivum22.7825.6891.5895forward
CNT30386294Saccharum spontaneumTriticum turgidum22.7825.8291.5895forward
CNT30564261Saccharum spontaneumActinidia chinensis22.0632.7492.3992forward
CNT30590647Saccharum spontaneumMusa acuminata22.5430.1393.6294forward
CNT30658093Saccharum spontaneumTriticum dicoccoides22.7821.7491.5895forward
CNT30608684Saccharum spontaneumGossypium raimondii22.0621.8588.0492forward
CNT30218533Saccharum spontaneumKalanchoe fedtschenkoi22.5418.0887.2394forward
CNT3067093Saccharum spontaneumLeersia perrieri22.7821.2590.5395forward
CNT30646927Saccharum spontaneumRosa chinensis22.0627.3885.8792forward
CNT30625732Saccharum spontaneumDaucus carota10.5520.5693.1844forward
CNT30689637Saccharum spontaneumTriticum urartu22.789.7391.5895forward
CNT30353803Saccharum spontaneumEragrostis tef22.7840.0892.6395reverse complement
CNT30480842Saccharum spontaneumArabidopsis halleri22.0618.8985.8792forward
CNT30362246Saccharum spontaneumSorghum bicolor28.7821.7896.67120forward
CNT30483063Saccharum spontaneumChara braunii22.341.1589.2593forward
CNT30704438Saccharum spontaneumPrunus avium17.0329.4688.7371forward
CNT30645213Saccharum spontaneumCannabis sativa22.0642.488.0492forward
CNT30120727Saccharum spontaneumCitrus clementina22.0616.7389.1392forward
CNT30101083Saccharum spontaneumOryza rufipogon22.5417.689.3694forward
CNT30116334Saccharum spontaneumOryza nivara22.5415.4190.4394forward
CNT30594327Saccharum spontaneumEragrostis curvula22.7826.8489.4795forward
CNT30726403Saccharum spontaneumLupinus angustifolius22.319.586.0293forward

Expression of CNT30450104

Peptides detected in this lncRNA

>peptide 1 (35 aa)
LVDEVAGGGGLAGVDMANDHNVDVNLLLPHGNGSS*

Sequence

>CNT30450104
AGCTTGTAGATGAGGTGGCCGGTGGTGGTGGACTTGCCGGAGTCGACATGGCCAATGACCACAATGTTGATGTGAACCTTCTCCTTCCCCATGGCAACGG
GAGCAGCTGACTAGTTAGCTGTATTCACAAACATCAGCAGAAGGATATATAGAGAAAACAGTCACACAAAAGTATTAGTAGTTGATAGATTGAATTTTTT
ATTTCAACAGAACAGTTGTGGCCATTCATTGACTAGCAGTAAATTAAAAGCACATATACATAAGCAGACTGCTAGGTTAATTGTTCTTTTGTTTAGTAGC
AAAGACAAAATAGTCATCAGGAAAACAGAGACCGTGCAGTCGATCAGTATTCATCCATCTGTGATTAACAATTTAATGAAGAGCAACCGATTGAGACGAA
TCAGATTATTCAATACA