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Detailed information on CNT30540891


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 4e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30359023Brassica napusLactuca sativa52.673.0680.26385forward
CNT30118654Brassica napusCitrus clementina48.3665.879.66354forward

Expression of CNT30540891

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTGY*

>peptide 2 (32 aa)
AIDIFISYKDIICLQRVVQYEDCRIQENESPT*

Sequence

>CNT30540891
TGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCAACATA
AAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAGGACATTGTTGTTGACTGGATCCGCCAAATGATCAAGAAGGTTCTGGTA
TGGCCCCACACCGGTTACTAGTCCTTGCACAAAATAGCCTAGGATTGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATT
GACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCCCCGGGGTAAGACGGGTCACCCGAACCGGCAAAACCTTTCTCTAAGCCCAAGAAGT
ACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTC
TGCCCAGTAGCTGTACGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAAGGAAGGGCAGTGTCTGCTGGAATCAAACCAGCTTTGCCAAGAATCTCA
GGGGCAATAGCTCCAGCTGCACCCAACATAGCTAACCATCTCGGTTCGATGAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGAATCCAT
AGTCGCCAGGTAAGCTGCAGATTAATCACAAC