Detailed information on CNT30644548


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522415Cannabis sativaSetaria italica26.0925.0789.2984forward
CNT30377398Cannabis sativaArabidopsis thaliana22.0519.2491.5571forward
CNT30381752Cannabis sativaManihot esculenta25.7827.1293.9883forward
CNT30509042Cannabis sativaSolanum lycopersicum27.3328.7688.6488forward
CNT30232760Cannabis sativaAnanas comosus24.5317.3289.8779forward
CNT30716661Cannabis sativaMalus domestica golden27.6428.7189.8989forward
CNT30339268Cannabis sativaEragrostis tef26.0928.6789.2984forward
CNT30356369Cannabis sativaLactuca sativa25.784.4189.1683forward
CNT30155101Cannabis sativaPrunus persica27.3315.8389.7788forward
CNT30706625Cannabis sativaPrunus avium25.784.3492.7783forward

Expression of CNT30644548

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MREAGFTEQRIPPALGSGRITGRCYLGPSWFTGLT*

Sequence

>CNT30644548
GCCTAGTAACGTGAGCCTGTAACTCAAGTGAGGGCATGTGGGAGATGGGACATTTGGTTAGCCCATTGGGCCGGATCCAGTGTTAGCTACTTACTGGCCT
GCCCGTTCCAAGCTGGGAGTTGGGCTCTGTGGTTTGGACGAAAGTCTGGCCCACTGGGCTCCTAGAGTGGAGGGTAATGCGTGAGGCTGGCTTCACAGAG
CAGCGAATACCTCCCGCTCTCGGCAGTGGAAGGATAACGGGCCGGTGCTACCTGGGCCCATCATGGTTCACTGGGCTGACTTAATAGGACCATTTCTTTT
TTCAATTCTCTTCTTAACTTTT