« Back to Arabidopsis thaliana search


Detailed information on CNT30374749


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 8e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311374Arabidopsis thalianaCamelina sativa60.28102.7288.53340forward

Expression of CNT30374749

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVVEVLLKAS*

>peptide 2 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

Sequence

>CNT30374749
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGAGGTGGTGGTGGAGGTCTTGCTGAAGGCAAGTTAGTACTTTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGTACTCTAGGAGGTC
GTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGCGTTTTCGCTGGCTTTACCTTCGTTAGATTCATTTGACTCGTTAGACTGATCACCTGT
GGCTGTGATCACAGAGGGAACAACAACCCTTTTCTCCTTTAGTTGAGCAAGTTTAGGAGGCAAAGCCACATTACCGCCAAATCTCTCTGCTCTTGCTTGA
TCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGCCAACTTATGCCTGTCTTTGTACGCAG