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Detailed information on CNT30540963


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375143Brassica napusArabidopsis thaliana56.2148.2488.95371forward
CNT30311374Brassica napusCamelina sativa38.3376.4485.77253forward
CNT3075899Brassica napusBrassica juncea99.5573.7498.93657forward

Expression of CNT30540963

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSYQFLERSKTVNHLSSLHVSSTTDKTQQAQELCELYSRFPLLFQELQEEAVAAEV*

>peptide 2 (46 aa)
MLNMLLPLNRKLMPIFIRRILLVQNIINRLRHHLKRRRNVIQRLTR*

>peptide 3 (45 aa)
LTAKRNVDRFSISPIILLLASDELPVPGEIKDGEPSFFASRFIND*

Sequence

>CNT30540963
CTTACTGCTAAGAGGAACGTTGATCGGTTCTCGATCTCCCCAATCATATTGCTCCTAGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAAAGACGGTG
AACCATCTTTCTTCGCTTCACGTTTCATCAACGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTACTCCCGCTTCCCGCTCCTCTTCCAAG
AGCTCCAGGAGGAGGCGGTGGCGGCGGAGGTCTAGGGGAAGGCACATTAGTGCTTTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGCACTCTAGGT
GGTCGTTTCTCAATATCCACAAGCTTCATTTTCGCCACGGCTTGCGCGTTTTCGCTAGCTTTACCCTCGTTGTTGCCGTCACTAGACTGATCACTTGCGG
TAACCGTCCTGGTCAAGGAGGGAACCGAAACTGGCTTCTCCTTGAGCTGAGCAAGTTTAGGAGGCAAAGCCACATTACCTCCAAACCTCTCAGCTCTCGC
TTGATCTGCCTTATGCTTAATATGCTTCTCCCTCTCAACCGCAAGCTTATGCCTATCTTTATACGCAGGATACTTCTCGTCCAGAACATTATCAACCGAC
TTAGACATCACCTGAAACGACGCCGCAACGTTATTCAAAGGCTCACCCGGTGAAGAAGCT