Detailed information on CNT30355976


BLAST search results

BLAST vs Swiss-Prot:
sp|P49729|UCRI1_TOBAC, E-value = 2e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539022Lactuca sativaBrassica napus45.2439.8882.05195forward
CNT30233867Lactuca sativaBrassica oleracea45.2451.3282.56195forward
CNT3080912Lactuca sativaBrassica juncea40.620.8380.57175forward
CNT30259795Lactuca sativaBrassica rapa40.620.8181.71175forward

Expression of CNT30355976

Peptides detected in this lncRNA

>peptide 1 (66 aa)
HNQPLRILNPSRILLWVPQRRHINTIGQLHIVLCSPSYKHRLSTPFHSHCRPRGRRGQERLYSRTC*

>peptide 2 (37 aa)
MLRMNLRTRRRRRDAYTNLPPVNTKYANARLLGSPGG*

>peptide 3 (72 aa)
TISHSGSLTLAASSCGSRRDATSTLLASFTSSSVRLLINTGFPRHFTVTVDLEGGEGKNVFTRGHAEDEFED*

>peptide 4 (30 aa)
MVVGVVHDLRSWVCDGGYCWWDCVLEFWGY*

Sequence

>CNT30355976
CCACAATCAGCCACTCCGGATCCTTAACCCTAGCCGCATCCTCCTGTGGGTCCCGCAGAGACGCCACATCAACACTATTGGCCAGCTTCACATCGTCCTC
TGTTCGCCTTCTTATAAACACAGGCTTTCCACGCCATTTCACAGTCACTGTCGACCTCGAGGGAGGCGAGGGCAAGAACGTCTTTACTCGCGGACATGCT
GAGGATGAATTTGAGGACTAGGAGGCGGAGGAGGGACGCGTACACGAATCTGCCACCTGTCAACACGAAATATGCGAACGCGCGTTTGCTTGGGTCGCCA
GGTGGATAACGTTCATGGTTGTGGGAGTCGTACACGATCTTCGAAGTTGGGTTTGTGATGGCGGCTACTGTTGGTGGGATTGTGTCCTCGAATTTTGGGG
TTATTGAGTTTGATGCAAATCCTGTGATGAA